Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0108 ATGGCGGATGTTGAGGTTGATGTCGCGGCGGCCGGAGGTGTCCCCAAGAAGAGAACGTTCAAGAAGTTCAGCTTCAGGGGTGTCGATTTGGATGCGCTTCTCGACATGTCCACTGATGAGCTTGTCAAGCTCTTCAGTGCCCGTGCTCGCAGAAGGTTCCAGAGAGGTCTCACCAGGAAGCCCATGGCCTTGATTAAGAAGCTTCGCAAAGCGAAAAGGGAGGCACCAGCTGGTGAGAAGCCAGAACCAGTGCGCACCCACCTCAGGAACATGATTATTGTGCCAGAGATGATTGGCAGCATTATCGGGGTGTACAATGGAAAGACTTTCAACCAGGTTGAGATCAAACCTGAGATGATTGGCCATTACCTTGCTGAGTTCTCTATTTCATACAAGCCTGTTAAGCACGGTAGGCCTGGTATTGGTGCTACTCACTCTTCCAGGTTTATTCCTCTCAAGTGA 462 0.5087 MADVEVDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0108 153 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 12 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lja4g0108 153 TIGRFAM uS19_arch: ribosomal protein uS19 20 153 IPR005713 GO:0003735|GO:0006412|GO:0015935
Lja4g0108 153 ProSitePatterns Ribosomal protein S19 signature. 106 130 IPR020934 GO:0003723
Lja4g0108 153 PANTHER BNAA03G55820D PROTEIN 5 153 - -
Lja4g0108 153 Gene3D 30s Ribosomal Protein S19; Chain A 11 153 IPR023575 GO:0003735|GO:0005840|GO:0006412
Lja4g0108 153 PRINTS Ribosomal protein S19 family signature 86 105 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lja4g0108 153 PRINTS Ribosomal protein S19 family signature 106 118 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lja4g0108 153 PRINTS Ribosomal protein S19 family signature 118 133 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lja4g0108 153 Hamap 30S ribosomal protein S19 [rpsS]. 49 142 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lja4g0108 153 Pfam Ribosomal protein S19 51 136 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lja4g0108 153 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 5 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lja4g0108 153 SUPERFAMILY Ribosomal protein S19 56 137 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0108 Lja-Chr4 832652 834326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0108 1 153 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.235 8.44e-95 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0108 K02958 - gmx:100499657 285.804