Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0105 ATGTTCATCTTTGATGAAGACGAAGTTTTTGAAAATGAGGCTGGAATTTATGAAGATTACGTTGATGAGGAATCGTTTGTGGACTTTGAAAACGGGTGTCATTTCGATACAGATGAAGATGTTTTGCATGAAGATGATGAGGATGAGCAGCATAGAGAAGAGTCAGTGGAACCAAATCTTGTAGCTATCAACAGTAAAGAAGACTATTTGCAGTTAGATTTCAGTTGTGTAGACCCTGTTGAAGTGACGAAGTTTCATTTTGCAAATGTGGAGCTTGCTTATGATTTCTACCACTGGTATGGAAGAATCATGGGTTTTTCTGCCCGTAGAGGAACCATACGCAGAAATAGAAAAGGGGAAGCTGTCCAGCAAACCTTTTTTTGCCACCGACAAGGATTTCGTGAAGAGAAGGAAATTTGTGATGAAATGAGATTGAGACGACAAAAGGTTGATTTTAGATGTGGATGTGATGCCAAATTCCGGATGGAGACATATGGGCTTCCATGCGAGCATATATTGGGTGTTCTTGTTTTTCTCCACATAACTGAATTGCCTATTTCTCTGGTCTCTAAACGATGGACTAAAGGTGCAAAGGATTGTTATAACGGGGAAGTAATGGAAGGCTCAATATTTTGGGAATCTGACGTGATTGCTAGATATGTTTGGCTTGTAGAGTCATGTAGAGAATTGTGTACGCTAGCTAGTAAGAAGGATGAGGATGACAACAACTTTGATGCCATTGCTGCTGGTTTGGGGAATGTTAATAACACGGGACCTGTTAGGAGGCCTCGAGTTCATGCAAGAGCGTCATCTTCGGGATTAACTACCAAGCGTACAATTAGATGCACCGCGTGCAAGGTCGCTGGGCACAACAGATTGACATGTCCTTTGTTAAGAGACATTGAGTATGAAAATCGCAGCTTTGAAAGGGATGACGAGAATGAAAGTATCTTTGGTGAAGATGAAGATGATGACTATGAAGATGATGACTATGAAGATTATGAGTATGGTGAAGATGACTATGCAGATTAA 1032 0.407 MFIFDEDEVFENEAGIYEDYVDEESFVDFENGCHFDTDEDVLHEDDEDEQHREESVEPNLVAINSKEDYLQLDFSCVDPVEVTKFHFANVELAYDFYHWYGRIMGFSARRGTIRRNRKGEAVQQTFFCHRQGFREEKEICDEMRLRRQKVDFRCGCDAKFRMETYGLPCEHILGVLVFLHITELPISLVSKRWTKGAKDCYNGEVMEGSIFWESDVIARYVWLVESCRELCTLASKKDEDDNNFDAIAAGLGNVNNTGPVRRPRVHARASSSGLTTKRTIRCTACKVAGHNRLTCPLLRDIEYENRSFERDDENESIFGEDEDDDYEDDDYEDYEYGEDDYAD* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0105 343 ProSiteProfiles Zinc finger SWIM-type profile. 139 180 IPR007527 GO:0008270
Lja4g0105 343 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 41 163 - -
Lja4g0105 343 MobiDBLite consensus disorder prediction 310 343 - -
Lja4g0105 343 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 41 163 - -
Lja4g0105 343 Pfam FAR1 DNA-binding domain 95 162 IPR004330 -
Lja4g0105 343 MobiDBLite consensus disorder prediction 314 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0105 Lja-Chr4 817480 819900 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja4g0105 FAR1 3e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0105 - - mtr:MTR_1g070355 111.694