Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0095 ATGGCTGAACGTGGTGGCGGAGATCGTGGTGGATTCGGCCGTGGCTTCGGCGGTCGTGGCGACAGAGGCCGTGGAGACAGAGGCCGTGGCGGACGCCGCAGGACTGGTGGCAGGCGCGACGAGGAGGAGAAGTGGGTCCCCGTGACCAAGCTAGGTCGTCTTGTCAGAGACGGCAAAATCCGAAGCCTGGAGCAGATCTACCTCCACTCCCTCCCAATCAAGGAGCACCAGATCATCGACATGTTGGTTGGACCCACTCTCAAGGACGAGGTCATGAAGATCATGCCGGTCCAGAAGCAGACCCGTGCCGGTCAGCGAACCAGGTTCAAGGCCTTCGTCGTCGTCGGCGACAACAATGGTCACGTCGGGCTCGGCGTGAAGTGCAGCAAGGAAGTTGCTACCGCCATTCGCGGTGGGATTATCCTTGCTAAGCTCTCTGTTATCCCCGTCAGGAGGGGATACTGGGGTAACAAGATCGGAAAGCCCCACACCGTTCCCTGCAAGGTTACCGGAAAGTGTGGTTCCGTCACTGTCCGCATGGTCCCTGCTCCTCGTGGTTCTGGAATCGTTGCTGCTAGGGTTCCCAAGAAGGTCTTGCAGTTCGCTGGGATTGATGATGTTTTCACTTCCTCCAGGGGTTCCACCAAAACCCTTGGAAATTTCGTCAAGGCTACTTTTGATTGTCTGCTGAAGACCTATGGTTTTCTGACACCTGAATTCTGGAAGGAGACTCGTTTCACCAAATCTCCATTCCAAGAGTATACCGATCTTTTGGCTAAGCCAACAGCAAAGGCCCTTATCCTTGAGGAGGAAAGGGTGGAGGCTTGA 828 0.5592 MAERGGGDRGGFGRGFGGRGDRGRGDRGRGGRRRTGGRRDEEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDMLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTAKALILEEERVEA* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0095 275 MobiDBLite consensus disorder prediction 19 42 - -
Lja4g0095 275 Pfam Ribosomal protein S5, C-terminal domain 171 243 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lja4g0095 275 MobiDBLite consensus disorder prediction 1 42 - -
Lja4g0095 275 ProSiteProfiles S5 double stranded RNA-binding domain profile. 87 150 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja4g0095 275 SUPERFAMILY dsRNA-binding domain-like 83 152 - -
Lja4g0095 275 ProSitePatterns Ribosomal protein S5 signature. 104 136 IPR018192 -
Lja4g0095 275 PANTHER RIBOSOMAL S SUBUNIT 1 273 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja4g0095 275 SUPERFAMILY Ribosomal protein S5 domain 2-like 163 243 IPR020568 -
Lja4g0095 275 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 273 - -
Lja4g0095 275 Pfam Ribosomal protein S5, N-terminal domain 87 151 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja4g0095 275 Gene3D - 44 149 - -
Lja4g0095 275 TIGRFAM uS5_euk_arch: ribosomal protein uS5 40 247 IPR005711 GO:0003735|GO:0006412|GO:0015935
Lja4g0095 275 Gene3D - 150 243 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0095 Lja-Chr4 710169 712310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0095 41 261 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.498 3.39e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0095 K02981 - gmx:100797105 475.322