Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0093 ATGCTCACAAGAAGAAAACTCCTGAACTTATTCACAATCCCCAAGCTAATTTCCCACCATCTCAATGCAGTTCCACACCCCTTTTCTCCAACCCCTAGGGTTTTACTCTTCTACAGAACGCAATCATCATCATCCTCCTCCTCCAATTTCCCTGAATACGAGATGCCCTCTGTAACCTGGGGCGTCATTCAAGGCCGCAAGGAGAAGCTCGTGTCGCGTGTCATCATCTTCGACTACCTCAAGGGTTTGGGAATCATCCCTGATGAATTGCACGACCTCGAGCTTCCTTCCACTGTTGATGTCATGAGGGAGCGCGTTGAGTTTCTTCAGAAGCTGGGTTTGACTGTGGATGATATCAACAATTACCCTTTGATGTTGGGTTGCAGTGTGAGGAAAAACATGATCCCTGTGTTGGGGTACTTGGAGAAAATTGGGATTTCTAGGTCTAAGCTTGGGGAGTTTGTTAAGAGTTACCCTCAGGTTTTGCATGCTAGTGTCATTGTTGAGCTTGCCCCTGTTGTTAAATTCCTCAGAGGGCTTGATGTGGAGAGGCAGGATATTGGGTATGTGCTGCTGAAGTACCCTGAGCTTCTAGGGTTCAAGCTTGAGGGTACCATGAGCACTTCAGTGGCTTATCTTATTAGTATTGGTGTGAATCCTAGAGATATTGGTCCAATGATTACTCAGTATCCATATATGTTGGGGATGAGAGTTGGGACTATGATAAAGCCTCTCATTGACTACTTGGTTTCTTTGGGGTTGCCTAAGAAGATTTTGGCAAGGATGTTGGAGAAGAGAGCTTATATACTTGGGTATGATCTTGAAGAAACTGTGAAACCAAATGTGGATTGTTTGGTCAGTTTTGGGGTAAGGAAGGAATGTCTGCCTTCCATTATTGCTCAATACCCTCAGATTCTCGGGCTTCCTGTTAAGGCGAAAATGTCTTCGCAGCAGTACTTTTTCAGTTTGAAGCTTAAGATTGATCCTGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGCCTTCATCAGAATGTGATCATGAAGCCTGTTGAGTTCCTCCTTGGTAGGGCGATTCTGTCGCAGGATGTGGCTAGCATGGTGGTCAAGTGTCCTCAGTTAGTTGCGCTGCGAGTTGAGCTCATGAAGAACAGTTTTTACTTCTTCAAGACTGAGATGGGGAGGCCCGTAAAAGAGCTTGTGGAGTTCCCTGAATACTTCACTTATAGTTTGGAATCCAGGATTAAACCCAGGTACCAGAGGCTAAAGAGCAAGGGGATAAGGTGTTCTTTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGTAATTACATTGAATCTGAAAGTGTCGGTCCATCGTTCTTTATGGGGGGGAAATTAGAGCTACCTGGCAATGCGATATTGTCAGATGAAGAAGAGGAGAGTGATGATGAAATGCTATATAGACGAACTGTTTCTCTTTAG 1491 0.45 MLTRRKLLNLFTIPKLISHHLNAVPHPFSPTPRVLLFYRTQSSSSSSSNFPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKLGLTVDDINNYPLMLGCSVRKNMIPVLGYLEKIGISRSKLGEFVKSYPQVLHASVIVELAPVVKFLRGLDVERQDIGYVLLKYPELLGFKLEGTMSTSVAYLISIGVNPRDIGPMITQYPYMLGMRVGTMIKPLIDYLVSLGLPKKILARMLEKRAYILGYDLEETVKPNVDCLVSFGVRKECLPSIIAQYPQILGLPVKAKMSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAILSQDVASMVVKCPQLVALRVELMKNSFYFFKTEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGNYIESESVGPSFFMGGKLELPGNAILSDEEEESDDEMLYRRTVSL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0093 496 SMART mt_12 188 219 IPR003690 GO:0003690|GO:0006355
Lja4g0093 496 SMART mt_12 296 328 IPR003690 GO:0003690|GO:0006355
Lja4g0093 496 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Lja4g0093 496 SMART mt_12 224 255 IPR003690 GO:0003690|GO:0006355
Lja4g0093 496 SMART mt_12 333 363 IPR003690 GO:0003690|GO:0006355
Lja4g0093 496 SMART mt_12 400 431 IPR003690 GO:0003690|GO:0006355
Lja4g0093 496 SMART mt_12 368 399 IPR003690 GO:0003690|GO:0006355
Lja4g0093 496 SMART mt_12 116 147 IPR003690 GO:0003690|GO:0006355
Lja4g0093 496 SMART mt_12 152 183 IPR003690 GO:0003690|GO:0006355
Lja4g0093 496 PANTHER EXPRESSED PROTEIN 41 479 - -
Lja4g0093 496 Gene3D Transcription termination factor 3, mitochondrial 102 241 IPR038538 -
Lja4g0093 496 Gene3D Transcription termination factor 3, mitochondrial 242 456 IPR038538 -
Lja4g0093 496 Pfam mTERF 138 446 IPR003690 GO:0003690|GO:0006355
Lja4g0093 496 PANTHER CGI-12 PROTEIN-RELATED 41 479 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0093 Lja-Chr4 700334 702032 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja4g0093 mTERF 1.1e-109 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0093 K15032 - gmx:100809590 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0093 4 700334 702032 Lja2g2144 2 24200901 24202870 PCT