Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0089 ATGGAAGCCTATGCCAATGGAAATCAATTCCCTGCTGGTCTCAGAATTCTTGCTGTTGATGAAGACATCAATGTTCTTAATCTTATTGAGGAGATGTGCACTCAATGCCATTATCATGTGACTCCATGCTCTGAAGCCAGAGTTGCATTGAGTCTCCTAAGGGAAAGAAATGTTCCTTTTGATTTGATACTAAGTGGTATTCGTATGCCGGACATGGATGGCTTTGAATTCCTTCAGCAAGTTACCAACGAGATTGATGTTCCTGTCATTATGATGTCTATGCCTGAGGAATCTACAAAAAGTGTTGTCATGAGGGCTATTACAAATGGTGCTAGTGATTTTTTTATCAAGCCTTTGAGAGAGGAGCAATTCAGGACCATCTGGCAGCATGTTATGAGGAAAGCCTTTAAGGAAGAAAATATTACCAGCTTGGAAGAGTATGATAGGAAGAGAAGGGGTTCCGATTCTTCTGTTACTGATGAAGGTGTTGATGCTGATACTGCCACAAAAGAGAACGCTTCAACAAAAGAAGCTGTGGTTTATGAGTCAGAGATTAATGGCTACACACCCACACAGAAGAAGCGTCGTATAGTTTGGACTGCAGAACTGCATGAAAACTTCATGAGGGCTGTCACGCAACTCGGGCTTCATAAGGCTGTGCCAAAGAAAATTCTTGAAGAGATGAATGTTCCTGATTTGACAAGAGAAAACGTTGCAAGCCATTTGCAGAAATTTAGAAACTTTTTGAAGAGATCCAATGCAGAGGCACATCAACAGAATGGAATGTCCAACAAATTCAAACATGGTGGATACAATGGATTTGAAGCTTTGGTTGCTTCTGGCCATATTTCACTTGAAATGCTCTCAAACTTTCAATCTGAGGTCATGGGTTTCCCAAACAATGATAATGTGCAGATGAATAACACATTGCAGCATCAGCAAATTCAGCAGCAGACACTCATGCAAATTCATTCAAACAATGGTTTTCAATCTTCTCATACTCAAATCATTGGTTATAATAACAATGTGATTTTGCCTCAATCAAGTAACTTTTCTGGCATTGCTCAATTCCCCGTGGACAACAACAGAGGTAGAAACATTTACTTACCTACTCAACATCTTCAAAACACATCTTTGAAGAGATCTTCATCAGTGCCTATTATTACACAAGGTGTTCCATATGGTTCTTCTACATCTAGTCATGATTCACAAGTTGTTTCTTATGTTGCACCTGTTGAGAATAGCTGCACAGATATGAATACACTGAACCAGGATCCAAATTATTCTATGCCACTAGAGGATCTCCCACCCTCATCAGGATATCCATAG 1329 0.398 MEAYANGNQFPAGLRILAVDEDINVLNLIEEMCTQCHYHVTPCSEARVALSLLRERNVPFDLILSGIRMPDMDGFEFLQQVTNEIDVPVIMMSMPEESTKSVVMRAITNGASDFFIKPLREEQFRTIWQHVMRKAFKEENITSLEEYDRKRRGSDSSVTDEGVDADTATKENASTKEAVVYESEINGYTPTQKKRRIVWTAELHENFMRAVTQLGLHKAVPKKILEEMNVPDLTRENVASHLQKFRNFLKRSNAEAHQQNGMSNKFKHGGYNGFEALVASGHISLEMLSNFQSEVMGFPNNDNVQMNNTLQHQQIQQQTLMQIHSNNGFQSSHTQIIGYNNNVILPQSSNFSGIAQFPVDNNRGRNIYLPTQHLQNTSLKRSSSVPIITQGVPYGSSTSSHDSQVVSYVAPVENSCTDMNTLNQDPNYSMPLEDLPPSSGYP* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0089 442 Pfam Myb-like DNA-binding domain 199 244 IPR001005 -
Lja4g0089 442 SMART REC_2 14 128 IPR001789 GO:0000160
Lja4g0089 442 CDD REC_typeB_ARR-like 16 131 - -
Lja4g0089 442 MobiDBLite consensus disorder prediction 146 171 - -
Lja4g0089 442 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 337 IPR045279 GO:0009736
Lja4g0089 442 MobiDBLite consensus disorder prediction 418 442 - -
Lja4g0089 442 Gene3D - 14 152 - -
Lja4g0089 442 Gene3D - 191 252 - -
Lja4g0089 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 250 IPR017930 -
Lja4g0089 442 SUPERFAMILY CheY-like 13 143 IPR011006 -
Lja4g0089 442 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 11 337 - -
Lja4g0089 442 SUPERFAMILY Homeodomain-like 191 251 IPR009057 -
Lja4g0089 442 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 194 248 IPR006447 GO:0003677
Lja4g0089 442 Pfam Response regulator receiver domain 16 126 IPR001789 GO:0000160
Lja4g0089 442 ProSiteProfiles Response regulatory domain profile. 15 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0089 Lja-Chr4 679655 681886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0089 8 274 Response Regulator Gene Family AT2G25180 45.487 8.15e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja4g0089 Response_reg 4.9e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0089 - K14491 lja:Lj4g3v3113240.1 802.357