Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0081 ATGTTAGGGAGTTCTTCTTCTTCTGATATGGCTCCTTCTCCTCCAAAGCATGATTTGTTCCTCAGCTTTAGAGGGGAAGATACCCGTGACAACTTCACTAGTCATCTCTATGCTCAACTTTGCAGCAAAAATATAGAAACCTTCATAGATAACAGGCTAGCCAGAGGCGATGAGATCTCACTAGCACTCTATACAGCAATTGAAGATTCAATGATTTATGTCATCGTTTTCTCGGAACACTATGCTTCTTCGTCGTGGTGTTTGGATGAACTTGTTAAGATTCTGGAGTGCAGGAAGAAATATGGAAGGGAGGTGATACCGGTTTTCTACAAGGTGGATCCATCAAATGTTAGGCACCAAAGAGGGAGTTATGCAGATGCTTTTGTTAAGCATGAACTGCGATTCAAGGATGAAGTAACACGGAGGTGGAAGGATGCTCTAGCTGAAGCAGCTGGACTCTCAGGCTGGGATTCACAAGTCACCAGGCCAGAATCCATACTTGTTGCAGATATTGTGGAAGATATTTTAAGAAAATTGGATCGTTCTTTCTCAAGTGATAATCAAGGAATGGTTGGAATGGACAATCACGTTGCACTAATCCAGTCCTTGTTGCACCTTGAGTCAGAGGCTGTTCGGATCATAGGAATTTGGGGCATGGGAGGAATAGGTAAAACAGCAATTGCTAGTGCAGTATATCACAAAATGGCAACTCAATTCAGTTCAAGCAGCTTCGTTCTTAATGTTCACGAAGAAATAGAAAGAGAGGGAGTACACCGTACTCGAAACAGATATTTGTCAGAGCTTCTGAAGAAGGAAGGCACATCCTCTGGATTAAGGTTGTCATTTGATAGGCTCCAAAGGAAAAAGGTGCTCCTTATCCTCGATGACGTCAAGAAATGGGGTCCAGTTAAAGAATTAATTGGAGGACGTGACAACTTCGGCCGGGGAAGTAGAATTGTTCTTACTAGTAGAGACATGCAAGTTCTTAAGAATTGTGAAGCTGATGAAATATATGAAGTGAAGGAGATGAATGTTCAAGACTCTCTGCAGCTATTCAGTTTAAATGCCTTTAAACAAACCCATCCCATAAAAACCTATATGGGCTTATCAGAAAAAGTATTAAATTATGCAAAAGGGATTCCATTAGCTCTCAAAGTTTTGGGCTCATTTCTTTATGGTAGAACAAGGGAAGCATGGGAAAGTGAGTTGCTAAAGCTGGAAAGGCTTCCAGATCTTGACATTTTCAATGTGTTGAAGTTAAGTTTTGATGGGCTTGATGATGAACAAAAGGATATATTTCTTGACATAGCTTGTTTCTATAGAGGACATATCGAGAATATGGTAGCACAAACACTAGATAGCTGTGGTTTCTCTGCTGACATTGGATTGGATGTTCTCAAAGATAGGTGCCTTATATATATTTTGGAAGGTAGAATCGTAATGCATGATCTAATACAGGAAATGGGAAAAGAAGTTGTTCGCCAACAATGTGTCAACAATCCTGCAAAACGGAGTCGATTATGGAAGGACAAAGAAGTTTGTCATGTTCTAAGACAGAACAAGGGGACAGATGCAATCCAGTGTATATATCTCGATACATGCAAAATAAAAACAGTTCAACTACATTCTGAAACTTTCAGAAAGATGCATAATCTGAGAATGCTCCAGTTCTACAAGTCTTCTGACTTTTGGCAAGGCTCAAATCTGGTCCTTCCTACATTTCTTGACAGTCTTCCAGATGAATTAAGAATTCTTCGTTGGGACGGCTTCCCTCAAAGATCTTTGCCGTTGCAATTTTTCCCGGAAAATCTTGTTAAACTTGATATGCGTCATAGCCACCTTGAACAACTTTGGGAGGGAGATAAGGATTTGCCCAATTTGAAAAGGCTCGATCTTAGTTATTCTTGGAAGCTGATTCGAATACCAGACCTCTCTTTGTGTCCAAATATTGAGGAAATAATTCTTAGTCATTGTAAATGCTTGATTCAAGTTCACTCCTCGAGTTTCCTCAGCAAGCTCAAATGTTTATATTTAAATGGTTGTGTTGAGCTTAGGAGTTTAAATCTTCCCAGTAATATTCTATCAACATCTTCTGGGTTAGTTGTTCTCTGTAAGTGTAGCAGGCTTGAAGAGTTTTTAATCAGTGGCAGAACTGAGGTGGTTCAATCATATGGTACACCGCGTTGTGATGGATACTGGGGAGCAGAAGAAATTTTTCATTATGCAAAAGTTAACCTGCGTTTGGACGCAGGAGAAGTTTTCACTGATGCTGAAGCTAACCTGTCTCATGGAAATCTTATCCAGTTTAATGCAAAAGGTTACATGAAGGCTAAATATTGTTCAGATACTTTTGACCCCATTGTTAGCATAAGAGAACCGGTGGATGGTATACACTTACTGAACATGAAAGTGATGAGAGAAACTATGCCCTCATTATTTCCAAGTCTCAATGAGCTTTGTTGGTTAGATATATCTGACTGTGAATCACTTACCAGCCTTCCAATTGACATTTGTAAGTTGAAATTTCTAAGAAGACTTTATCTCCGTGGTTGCTCAAATTTGGAGAATTTCCCTGAAATTGAGGATACAATGGAAAATTTAAAGGTGCTCATCTTAGATGAAACAGCTATAAAGAAACTACCTTCATCCTTGCACCGATTTGTTGGGCTTGAAGAGTTGAGCTTACACAACTGCCCAAGGCTTGAGATTATTCCCTCTTCTATTGGAAGTCTCACCAAACTCTGCAAGTTACGTCTTACCTGCTGTGAATCACTTGAAACTTTTCCAAGCAGCATTTTCAACTTGAAGTTGACAAAACTTGATTTGCATGGTTGCACAATGCTAAAGACCTTCCCAGAGATCTTGGAGCCTGCAGAAAGTTTTGCTCACATTAACTTAACAAAAACAGCAATTAAAGAACTGCCTTCATCCTTGGATAATTTGATTGGGCTTCGAACCTTGCGTTTGAACTTGTGCAGTGATCTTGAGTCACTTCCAAACAGCATTGCTAATCTAAGCCTTCTATCCGAGCTTGATTGTTCAGGCTGCGGCAAATTAACTAAAATCCCAAATGATATTGGTTGCTTGTCATCCTTAAGGGAATGGTCACTGCATGATAGCGGTGTTGTGAGCCTTCCAGAGAGTGTTGCTCATCTATCAAGCTTGAAATCACTTGACTTGAGTGATTGCAAAAAGCTTGAATGTATCCCAAAGCTTCCACCATATCTAAAACAGTTGCTGGCGTTTGATTGTCCATCCATTAGAAGAGTGATGTCAAACTCAAGGTTTGAACTCCCATCAGGTTCCAAAGAGGGCACCTTCAAATTTCATTTTACCAATAGTCAAGAACTGGATGCAGTTGCTAGAAGTAATATTGTGGCTGCTGCTTGGCTAAGGATGACTGAGGAGGCTTATAGGTCCGTATTCTTTTGCTTTCCAGGGAGTGCAGTTCCACAATGGTTTCCTTACCGTTGCGAGGGACATTCAGTAACTGCAAGTAAAGATTCTCTAAATTGGTTCAGTGATAACAGACTCATTGGTTTCGCCCTATGTGTCGTTTTGCAAATTGAAGACATGGATGATATAAATGATAGAACTGGTTCTTTGCCATACGAGTTAAAATTTGAATATGGTGATGGAATGAAGAAATCTCTAAATCATGATGAGCTAAAAAGCCATTTCTACTGGAAGAGACAAGTTAGGACTTTCGTCCAAGATCACACTTTCCTATGGAAACATCACTTGGACTCTGCAAGCATCAGAAACATTCTTTCTGACGCCCCCAACTTAAATTTCAAGATCCACAAATATGAGGATGTTTATTTGCGGTCATCTCATACAGACAGCTTGCTTTTGAATATCAGAAAATATGGGAAGCCATATTCTAAGCCAGCTTTCACGGTAAAAGAGTGTGGAATATGCCCTCTTTATGCCAAAGAAAAAAGAAGAGTATGGCGTTGCTGGTGA 3966 0.3989 MLGSSSSSDMAPSPPKHDLFLSFRGEDTRDNFTSHLYAQLCSKNIETFIDNRLARGDEISLALYTAIEDSMIYVIVFSEHYASSSWCLDELVKILECRKKYGREVIPVFYKVDPSNVRHQRGSYADAFVKHELRFKDEVTRRWKDALAEAAGLSGWDSQVTRPESILVADIVEDILRKLDRSFSSDNQGMVGMDNHVALIQSLLHLESEAVRIIGIWGMGGIGKTAIASAVYHKMATQFSSSSFVLNVHEEIEREGVHRTRNRYLSELLKKEGTSSGLRLSFDRLQRKKVLLILDDVKKWGPVKELIGGRDNFGRGSRIVLTSRDMQVLKNCEADEIYEVKEMNVQDSLQLFSLNAFKQTHPIKTYMGLSEKVLNYAKGIPLALKVLGSFLYGRTREAWESELLKLERLPDLDIFNVLKLSFDGLDDEQKDIFLDIACFYRGHIENMVAQTLDSCGFSADIGLDVLKDRCLIYILEGRIVMHDLIQEMGKEVVRQQCVNNPAKRSRLWKDKEVCHVLRQNKGTDAIQCIYLDTCKIKTVQLHSETFRKMHNLRMLQFYKSSDFWQGSNLVLPTFLDSLPDELRILRWDGFPQRSLPLQFFPENLVKLDMRHSHLEQLWEGDKDLPNLKRLDLSYSWKLIRIPDLSLCPNIEEIILSHCKCLIQVHSSSFLSKLKCLYLNGCVELRSLNLPSNILSTSSGLVVLCKCSRLEEFLISGRTEVVQSYGTPRCDGYWGAEEIFHYAKVNLRLDAGEVFTDAEANLSHGNLIQFNAKGYMKAKYCSDTFDPIVSIREPVDGIHLLNMKVMRETMPSLFPSLNELCWLDISDCESLTSLPIDICKLKFLRRLYLRGCSNLENFPEIEDTMENLKVLILDETAIKKLPSSLHRFVGLEELSLHNCPRLEIIPSSIGSLTKLCKLRLTCCESLETFPSSIFNLKLTKLDLHGCTMLKTFPEILEPAESFAHINLTKTAIKELPSSLDNLIGLRTLRLNLCSDLESLPNSIANLSLLSELDCSGCGKLTKIPNDIGCLSSLREWSLHDSGVVSLPESVAHLSSLKSLDLSDCKKLECIPKLPPYLKQLLAFDCPSIRRVMSNSRFELPSGSKEGTFKFHFTNSQELDAVARSNIVAAAWLRMTEEAYRSVFFCFPGSAVPQWFPYRCEGHSVTASKDSLNWFSDNRLIGFALCVVLQIEDMDDINDRTGSLPYELKFEYGDGMKKSLNHDELKSHFYWKRQVRTFVQDHTFLWKHHLDSASIRNILSDAPNLNFKIHKYEDVYLRSSHTDSLLLNIRKYGKPYSKPAFTVKECGICPLYAKEKRRVWRCW* 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0081 1321 Gene3D Ribonuclease Inhibitor 937 1094 IPR032675 -
Lja4g0081 1321 Gene3D - 343 426 IPR042197 -
Lja4g0081 1321 ProSiteProfiles TIR domain profile. 15 179 IPR000157 GO:0007165
Lja4g0081 1321 Pfam Leucine Rich Repeat 603 622 IPR011713 -
Lja4g0081 1321 SMART till_3 16 153 IPR000157 GO:0007165
Lja4g0081 1321 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 156 IPR035897 -
Lja4g0081 1321 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 796 904 IPR044974 GO:0006952
Lja4g0081 1321 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 889 1188 IPR044974 GO:0006952
Lja4g0081 1321 Gene3D - 15 181 IPR035897 -
Lja4g0081 1321 Pfam NB-ARC domain 198 406 IPR002182 GO:0043531
Lja4g0081 1321 PRINTS Disease resistance protein signature 377 391 - -
Lja4g0081 1321 PRINTS Disease resistance protein signature 284 298 - -
Lja4g0081 1321 PRINTS Disease resistance protein signature 213 228 - -
Lja4g0081 1321 PRINTS Disease resistance protein signature 622 638 - -
Lja4g0081 1321 SUPERFAMILY L domain-like 798 1085 - -
Lja4g0081 1321 Gene3D - 182 341 IPR027417 -
Lja4g0081 1321 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 889 1188 - -
Lja4g0081 1321 Gene3D Ribonuclease Inhibitor 511 718 IPR032675 -
Lja4g0081 1321 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 796 904 - -
Lja4g0081 1321 Pfam TIR domain 16 189 IPR000157 GO:0007165
Lja4g0081 1321 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 713 - -
Lja4g0081 1321 SUPERFAMILY RNI-like 582 873 - -
Lja4g0081 1321 SUPERFAMILY "Winged helix" DNA-binding domain 413 517 IPR036390 -
Lja4g0081 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 436 IPR027417 -
Lja4g0081 1321 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 713 IPR044974 GO:0006952
Lja4g0081 1321 Pfam C-JID domain 1145 1313 IPR045344 -
Lja4g0081 1321 Gene3D Ribonuclease Inhibitor 797 936 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0081 Lja-Chr4 630741 635666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0081 818 987 WRKY Transcription Factor Family AT4G12020 35.294 8.78e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0081 - - lja:Lj4g3v3113360.1 1573.91