Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0078 ATGGGGGTGAATGTACATATGGCCACCAAAGATGGTGAGCGTGCTAAGTCAGATAACAATGATATGAATTCGGAATCTCTTGGCGAATCAGAAAGTCTCTCTGATATTGATGATCAAGAGGTTGATGGGTACTTTCTCAATGAGGAGGAAAAGAATATGAAGAAGATCTTATGGGAAGATATGAATCGAGAATATCTTGAGAAAGAAGCAGCCAAGCAAGCTGAGGCAAATTTCCAAAACTGTTCTGAGGATTTCCTTGCAGCGAGAGAACTTGTTCAATCTGTTGGTGCAACTGTGGCCAAATCCAGAAAGGAAAAGAGACAGAAACAACTTCAAGAGGAAAAAAGCATGGGTCCTGCTCAATCTCCTCCAGATGCCTCAAGCCGAATGTTGAAAAGAAAGAGGCTCGAAAGCAAAGTCAATTTTGATCTCTTGGAAAAATTATTCGGAACTGATAATTCAGAGAATCCCAAGAAAGTACAATAG 486 0.4053 MGVNVHMATKDGERAKSDNNDMNSESLGESESLSDIDDQEVDGYFLNEEEKNMKKILWEDMNREYLEKEAAKQAEANFQNCSEDFLAARELVQSVGATVAKSRKEKRQKQLQEEKSMGPAQSPPDASSRMLKRKRLESKVNFDLLEKLFGTDNSENPKKVQ* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0078 161 MobiDBLite consensus disorder prediction 1 40 - -
Lja4g0078 161 MobiDBLite consensus disorder prediction 98 133 - -
Lja4g0078 161 Pfam Brf1-like TBP-binding domain 34 149 IPR011665 -
Lja4g0078 161 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 11 149 IPR000812 GO:0006352|GO:0070897
Lja4g0078 161 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 11 149 IPR029529 GO:0000126|GO:0000995|GO:0006383
Lja4g0078 161 Gene3D Single helix bin 28 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0078 Lja-Chr4 615689 619128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0078 40 134 Inorganic Solute Cotransporters AT2G01280 42.105 1.81e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0078 K15196 - lja:Lj4g3v3113430.2 282.722