Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0062 ATGGGGAAGAAGAAGAAGAGGGTTTCCTCCAAGGTCTGGTGTTATTACTGTGATCGCGAATTCGACGACGAGAAAATCCTGGTGCAGCATCAGAAAGCCAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCTGGCGGCATGTCCATCCATGTCCTCCAAGTTCACAAGGAATCCGTCACCAAGGTGCCCAATGCGAAGCCTGGCAGAGAGAGTACAGATATTGAGATATATGGGATGCAAGGGATTCCACCAGATGAGTTGGCTGCTCATTATGGAGAGGAAGAGGATGATGTTCCATCAAAGGCAGCCAAGGTGGATGTCCCATCAGCCCAGCTTGTAGGTGGAATGGTGCCGCCTCCTTTGGGTCCAGGATATCCTCCTCGATCAACCTTGGGCCCAATGCCACCAATGTATAATCACGCTGTGCCTCCTAGTGCATGGCCTGTTCCACCTCGACCTCAGCCATGGTTTCCACAACCTCCAGCTGTTTCCATGCCTCCTCCTGTTCCTTATCCACAACAGCCATTATTTCCTGTGCAGAATATGAGGCCACCACTGCCATCAACTACTTCTCTAGTTCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTACACCTTCTGTCCCAGTTTCACAACCATTATTTCCTGTTGTTGGAAATAACCACACATCAAGTCAAAGTTCAACATTTTCTGCTGCACCTATTTCTCCAGGTGTTGCATCAATAACCCCAGTGCTGTCTTCAAATGTCCCTGTTGATGCACATTTGGGTGTCAACTCTTCTGTGACAAGTAGTTATCAGGCAATAGGGATTCCAGGTGGGCCAGCAAGTAACTCACATTCTTATGCTTCTGGTCCAAATACCGGTGGTCCTTCAATTGGCCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCCGCCACTAATGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTACCAAAATATCAGGTGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTGCAATACATGGAGTTGCTTTCACATCTAACCAGATGAGTAGGTTTTATGCTTCCTATTTACAGATTCAGTTGTTTACGCATTGTTACCTATTTAAAGAGGTATTTCTGTGTAAATTTCTAGCCCTGTTTTGA 1191 0.4685 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMSIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDELAAHYGEEEDDVPSKAAKVDVPSAQLVGGMVPPPLGPGYPPRSTLGPMPPMYNHAVPPSAWPVPPRPQPWFPQPPAVSMPPPVPYPQQPLFPVQNMRPPLPSTTSLVQTQITPPGLPTSTPSVPVSQPLFPVVGNNHTSSQSSTFSAAPISPGVASITPVLSSNVPVDAHLGVNSSVTSSYQAIGIPGGPASNSHSYASGPNTGGPSIGPPPVIANKAPAPQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQVSHTTSAIHGVAFTSNQMSRFYASYLQIQLFTHCYLFKEVFLCKFLALF* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0062 396 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Lja4g0062 396 PANTHER ZINC FINGER PROTEIN 207 1 361 - -
Lja4g0062 396 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Lja4g0062 396 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Lja4g0062 396 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 361 - -
Lja4g0062 396 SMART c2h2final6 12 35 IPR013087 -
Lja4g0062 396 SMART c2h2final6 36 59 IPR013087 -
Lja4g0062 396 MobiDBLite consensus disorder prediction 282 310 - -
Lja4g0062 396 Gene3D Classic Zinc Finger 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0062 Lja-Chr4 502448 505968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0062 1 369 C2H2 Transcription Factor Family AT1G30970 62.532 9.66e-141 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g0062 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0062 - - gsj:114421245 580.096