Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0061 ATGCCTTTTGTGACAACAGAGACAACAAAAACAGTAGCAGAACACATCAAATGGAGAAGACCCAGAGACCAATTCAGGCATCATCATCATCATCACCACCACCCCATTTCAGAAACAGATCCAAACCCACAAATCCAATCCACTCGCTGCAAGTCCACCATTTCCGCTCTGCTCCTCTCCACTTTCTCCAATGAAACCACCACCACCACCCCACAAGCTGCCACCAGTGCCCGGAGCAGGAAGAAGAGCAACTTTTCTGCAGCAGCCTTCAGAGGGTTGGGCTGCACCGCTGGCGCGTCCCAGCAGGTGTCGGTGCCGGCGGCGATTCGCGCCTCCGCGGATTGGCAAGGGAAGAAAGGCAGAAAGAAGAAGCACAAGAGGAACAGCAGCAACAAGAATTGCCATGGTGGGATGGTAGATGGTTCTTCTGCTACTTGTGTGGATTTTCAAGATGTTTGGTGTGGTCCTGGAATTGGATTCTCAGGGGATGCTGTTGCTGCCTCTGTTGATTGTGTTGTGTCTAGAAAGAATGTCTCTGCAAGGGGGAAGATTGATGTGGAGAAGATAGCACAGAGAGAGCGTTCATATTCTTGTCGACATTCTGTCGTCACCTTCCCGGACAGTGCTGATGAAAACGTTTTCACGCCACCCTTTGAAGAACCTGAAACATACTATGTAAGAGATTCTGAGATTATAATGCTTCAAGGAAGTATAGTACGATTAAATTCACAAGACCGTCATAGAGACTTGAGACTTGATGTTGACAACATGTCGTATGAGCAATTACTTGAGCTCAGTGAGAGGATTGGGTATGTCAGCACCGGACTGAAAGAAGAAGAGATGCGGAAGAACATAAGGAAGCTTCAGATTTCGGATGATGCGTCTCAAGTAGACAAAAATTGCACCATTTGTCAGGAAGAGTATGAAGTAGAAGAGGAAATTGGGAGACTTAACTGTGGTCACAGCTATCACTATCAGTGCATACAGCAATGGGTTGAACAGAAAAATTTCTGTCCGGTCTGCAAACGACTAGTTGCTGCTAGGCACTAG 1050 0.4724 MPFVTTETTKTVAEHIKWRRPRDQFRHHHHHHHHPISETDPNPQIQSTRCKSTISALLLSTFSNETTTTTPQAATSARSRKKSNFSAAAFRGLGCTAGASQQVSVPAAIRASADWQGKKGRKKKHKRNSSNKNCHGGMVDGSSATCVDFQDVWCGPGIGFSGDAVAASVDCVVSRKNVSARGKIDVEKIAQRERSYSCRHSVVTFPDSADENVFTPPFEEPETYYVRDSEIIMLQGSIVRLNSQDRHRDLRLDVDNMSYEQLLELSERIGYVSTGLKEEEMRKNIRKLQISDDASQVDKNCTICQEEYEVEEEIGRLNCGHSYHYQCIQQWVEQKNFCPVCKRLVAARH* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0061 349 MobiDBLite consensus disorder prediction 117 131 - -
Lja4g0061 349 SUPERFAMILY RING/U-box 300 346 - -
Lja4g0061 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 346 IPR013083 -
Lja4g0061 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 349 IPR045191 GO:0061630
Lja4g0061 349 SMART ring_2 301 341 IPR001841 -
Lja4g0061 349 MobiDBLite consensus disorder prediction 24 46 - -
Lja4g0061 349 Pfam Ring finger domain 300 342 IPR001841 -
Lja4g0061 349 ProSiteProfiles Zinc finger RING-type profile. 301 342 IPR001841 -
Lja4g0061 349 MobiDBLite consensus disorder prediction 113 135 - -
Lja4g0061 349 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 7 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0061 Lja-Chr4 491592 496447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0061 12 260 C3H Transcription Factor Family AT1G73760 37.370 1.37e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0061 - - gmx:100788837 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2134 2 23970835 23975187 Lja4g0061 4 491592 496447 ECH
Lja4g0061 4 491592 496447 Lja4g0061 4 491592 496447 ECH