Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0043 ATGGATCTTGAGGAGGACATTCGTTCTTTACAGCTCGATTCAGCAGAAGACAATAATGGGGTGGTAAATCGAGAGGATGGAAAGGAAGAAGTAGAGAAATCTGACAAGATGGATGAAGATCCAAATCAGGAGGTTAAGGCACAGGCTGCTGAGGCTCAGGAGGTTCAGGCACAGGCTATTGAGGCTGAGCCAACAGTGAATGAGGAAATCTCCGTGGCCCCAGATGAAGAAGAGGAGCCTGCAATGAAGAAAAGACACTTGAATGTCGTATTCATAGGCCATGTCGATGCTGGTAAGTCTACAACAGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAACGGACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTCGTGAAAGCTGGTATATGGCCTATATTATGGATACAAATGAGGAGGAGAGGGTCAAGGGAAAGACAGTTGAAGTTGGAAGAGCTCATTTTGAGACAGAGACATCTAGGTTCACCATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAATTTGAAACTGGATATGAGAAAGGTGGTCAGACTCGTGAGCATGTCCAGCTTGCAAAAACTCTTGGAGTGGCTAAGCTGCTTGTTGTTGTCAACAAAATGGATGATCCTACTGTAAACTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGATTCCATTTCTTAAGCAATCGGGATACAATGTAAAGAAAGATGTCTTGTTTTTACCAATATCGGGGCTGATGGGCTCAAACTTAAAAACAAGATTGGATAAAAGCACTTGTCCATGGTTTAATGGGCCTTGCTTATTTGAAGCCCTTGATTCTATTGAAGGACCTCCTCGAGATCCCAAAGGTCCTTTTAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGTAAAGTGGAATCTGGTTCTATTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGTTCAAGTTAAAGTTGTTGCTGTATTTATTGATGAAGAACGGGTTAAGCGTGCTGAACCTGGTGAAAACTTGCGGGTTAGAGTATCTGGTATTGAAGAAGAAGACTTATTATCTGGGTTTGTTTTGTCTAGTGTTGCAAAACCAATTCCATCAGTTACTGAGTTTGTTGCTCAGTTGGTTATCCTTGAATTGCTGGACAATGCCATCTTTACTGCTGGGTACAAGGCTGTTCTGCATATCCACTCTGTAGTTGAGGAATGTGAAATCGTGGAGCTCTTGCATCAAATTGATCCGAAGACAAAAAAGTCTATGAAAAAAAAAGTCCTCTTTGTGAAGAATGGCGCTGTTGTATTATGCCGTGTTCAGGTTAATAGCATGATATGCATTGAGAAGTTCTCTGACTTTCCGCAACTAGGGAGGTTTACTCTTCGCACTGAAGGAAAAACTGTTGCTGTTGGGAAAGTCACTGCTCTGTGA 1533 0.4201 MDLEEDIRSLQLDSAEDNNGVVNREDGKEEVEKSDKMDEDPNQEVKAQAAEAQEVQAQAIEAEPTVNEEISVAPDEEEEPAMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETSRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVAKLLVVVNKMDDPTVNWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLMGSNLKTRLDKSTCPWFNGPCLFEALDSIEGPPRDPKGPFRMPIIDKFKDMGTVVMGKVESGSIREGDSLLVMPNKVQVKVVAVFIDEERVKRAEPGENLRVRVSGIEEEDLLSGFVLSSVAKPIPSVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLHQIDPKTKKSMKKKVLFVKNGAVVLCRVQVNSMICIEKFSDFPQLGRFTLRTEGKTVAVGKVTAL* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0043 510 CDD eRF3_C_III 402 510 - -
Lja4g0043 510 Gene3D Translation factors 313 398 - -
Lja4g0043 510 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 140 155 IPR031157 -
Lja4g0043 510 PANTHER BNAA06G12300D PROTEIN 75 504 - -
Lja4g0043 510 MobiDBLite consensus disorder prediction 19 45 - -
Lja4g0043 510 PRINTS GTP-binding elongation factor signature 88 101 IPR000795 GO:0003924|GO:0005525
Lja4g0043 510 PRINTS GTP-binding elongation factor signature 167 177 IPR000795 GO:0003924|GO:0005525
Lja4g0043 510 PRINTS GTP-binding elongation factor signature 227 236 IPR000795 GO:0003924|GO:0005525
Lja4g0043 510 PRINTS GTP-binding elongation factor signature 183 194 IPR000795 GO:0003924|GO:0005525
Lja4g0043 510 CDD eRF3_II 315 396 - -
Lja4g0043 510 Pfam Elongation factor Tu C-terminal domain 401 509 IPR004160 -
Lja4g0043 510 Gene3D - 65 307 IPR027417 -
Lja4g0043 510 SUPERFAMILY Translation proteins 308 400 IPR009000 -
Lja4g0043 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 319 IPR027417 -
Lja4g0043 510 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 84 310 IPR000795 GO:0003924|GO:0005525
Lja4g0043 510 Pfam Elongation factor Tu GTP binding domain 84 286 IPR000795 GO:0003924|GO:0005525
Lja4g0043 510 CDD EF1_alpha 88 309 - -
Lja4g0043 510 Coils Coil 42 62 - -
Lja4g0043 510 PANTHER TRANSLATION FACTOR 75 504 - -
Lja4g0043 510 Pfam Elongation factor Tu domain 2 328 394 IPR004161 GO:0005525
Lja4g0043 510 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 404 509 IPR009001 -
Lja4g0043 510 Gene3D Translation factors 403 510 - -
Lja4g0043 510 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0043 Lja-Chr4 337790 346996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0043 84 510 Eukaryotic Initiation Factors Gene Family AT5G60390 38.605 1.44e-99 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0043 K03267 - gmx:100793653 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0043 4 337790 346996 Lja4g0043 4 337790 346996 ECH