Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0030 ATGGACTCTATTTGGGTCCCTCCTCCTCCTCCGCCACCAACCGCCGTTCCCTTCACCCAGGAAGCCATCAATCACGCACCAGACAGCAACATCCCAATTAACTCCTCTGCCCCTGCGAATCATCCACCTTATGCTGAGATGATATACAGAGCAATTGAGGCGTTGAAGGAGAAGGATGGATCAAGCAAAACAGCAATTGCCAAGTACATCGAGGAAGCCTACACCGACCTTCCACCTGCACACTCCACCCTCTTGACTCACCACCTCAAGCGCTTGAAGGACACTGGTCTCCTCATCATGCTCAAGAAATCTTACAAGCTCCCTTCTTCTCTCCCTTCCGACATCACTCAGAATGCTGCTCAGCCTGTCCGGAGAGGACGCCCTCCCAGATCTGGAATTCCTAAGAGGCGCGGCCGCCCTCCCAAGCCCAAATCTCTCTCCAACGGGCTCAAGCGCCGCCCACCCAAGCACCAATTGCAGGCCACTGTCATCCCGTTCGCTGATCCTTCTCTCGCTCAGCCGCCCGTGCCAGTTGGCTCTCCGAGGCCCAGAGGCCGGCCCAGGAAAAATGCAGCTGCACTGCCGCCGCCTCATGCGGTTGGAGGTGTCGATTCCTCCCTGATGGTGCCAGGCCGTCCCCAGAAGCTTGCCGTCAGAGGCAGGCCCAAGAATCCTGCCGGAAGGCCCGTTGGCCGCCCGAAGGGAACAACATCTGCTAATATAGCGCAGAGGATTGCTAATGAGAATCTAAGGAGGAAACTTGAATACTTTCAATCAAAAGTGAAGGAATCTCTTGATGTGCTGAAGCCTTATTTTGACCATGCAAGCCCAGTGCCTGCAATTGCAGCAATCCAAGAGCTTGAAATAGTGGCAACTTCAGACCTCAAAGCACCACTAAGGGATGTTCCTTCACAGAAAATTCCTGAACAACTACCATTGCAGGAACATCTACTACCCCAGCCACTGCCGGAGCCACAGATCACATATCAGCAACAACATCTCCAGACACAGCTGCATCAACTTTTTCAATTTCAACCACATGCTTCATTCCCAAGCTAG 1059 0.5345 MDSIWVPPPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKGTTSANIAQRIANENLRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAAIQELEIVATSDLKAPLRDVPSQKIPEQLPLQEHLLPQPLPEPQITYQQQHLQTQLHQLFQFQPHASFPS* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0030 352 Pfam linker histone H1 and H5 family 41 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja4g0030 352 MobiDBLite consensus disorder prediction 109 239 - -
Lja4g0030 352 CDD H15 38 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja4g0030 352 SMART AT_hook_2 181 193 IPR017956 GO:0003677
Lja4g0030 352 SMART AT_hook_2 227 239 IPR017956 GO:0003677
Lja4g0030 352 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Lja4g0030 352 PRINTS Histone H5 signature 54 71 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja4g0030 352 PRINTS Histone H5 signature 129 143 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja4g0030 352 PRINTS Histone H5 signature 27 48 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja4g0030 352 Gene3D - 36 114 IPR036388 -
Lja4g0030 352 SUPERFAMILY "Winged helix" DNA-binding domain 37 112 IPR036390 -
Lja4g0030 352 SMART h15plus2 38 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja4g0030 352 PANTHER HISTONE H1-LIKE 123 306 - -
Lja4g0030 352 PANTHER HISTONE H1-LIKE 10 154 - -
Lja4g0030 352 MobiDBLite consensus disorder prediction 1 41 - -
Lja4g0030 352 MobiDBLite consensus disorder prediction 23 37 - -
Lja4g0030 352 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 40 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja4g0030 352 PANTHER HISTONE H1 123 306 - -
Lja4g0030 352 PANTHER HISTONE H1 10 154 - -
Lja4g0030 352 MobiDBLite consensus disorder prediction 1 17 - -
Lja4g0030 352 PRINTS AT-hook-like domain signature 134 144 IPR017956 GO:0003677
Lja4g0030 352 PRINTS AT-hook-like domain signature 179 190 IPR017956 GO:0003677
Lja4g0030 352 PRINTS AT-hook-like domain signature 225 235 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0030 Lja-Chr4 259219 261530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0030 47 134 Single Myb Histone (SMH) Gene Family AT1G49950 36.364 5.03e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0030 - - lja:Lj2g3v0677970.1 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0030 4 259219 261530 Lja4g0030 4 259219 261530 ECH