Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0029 ATGAAGAACATTCTTAAGAAGTTTCATATCATGTCTAGTAATCAATCAGAGGATGCAAGAGGAGGGTCTACTCCATCAAAGAGCAACAAGTCCACTGATGGTTCATCTTCATCCCCTAAGAAGCTTTCCAACTGGTTGCATTCAGTTTCTAACAGGCAGTGTCCGAGCCCTCCATCTCCAAGCCCCGCCAGAGCAGAAAGAGTAGAGCCATCTGATTTGGTGAGCAGTGCTGGGGGTTTAGATGTTGCTTCTGATTCTGTCAAGTGTGATTCGGGGTCTAGCACTTCGAGGGATCCTGAAGTGGAAGAAGAATATCAGATACAATTGGCTTTGCAGCTGAGTGCTAAGGAGGATCCAGAGGCTGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTAGTGACACTGATAATCCACCAGCAGAAGTTGTGGCATACCGGTACTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCAGATGGTTTCTATGATCTGTATGGGATCTTAACCGAGTCAACCTCTACAAGAATGCCTTCTCTTGTAGATCTGCAAGGTACACCAACCTCAGATGGTGTCACATGGGAAGCAGTCTTGGTCAACAGGGTTGCTGATTCCAATTTGATGAAACTTGAGCTAAAAGCTCAGGAGCTAGCAGCCAAGTCAAGAAAACATTCTGAAGTAGTTGTAGATAGTAATTTGGTGCACAATCTTGCAGTATTAGTGGCTGAGTATATGGGTGGATCAGTTGAAGATCCTGAAAGCATGTCAAGAGCATGGCGTAGTCTTAGCTACAGTCTAAAAGCGACCCTCGGTAGCATGGTTTTGCCACTTGGTTCACTGACCATTGGATTGGCTCGACATCGCGCATTGTTATTTAAGGTGTTAGCTGATAGTTTGGGCATCCCATGTCGGTTGGTTAAAGGACTGCAATATACAGGTTTGGTCGATGTGGCGATGAATTTTGTCAAGATCGATGATGGAAGGGAGTACATTGTTGATCTCATGGCAGCTCCTGGAACACTTATTCCATCCGATTCAACAGGTTCACATGCCGAGTATGACGAATCACCTTTTGTAGCCACTCCATCAAGAGACCTTGATTCATCTCATATAGCATCATTCAGCAGTGGAGCTGGAAGTTCATCTGAAGAAACTTCATCCTTTGGGATTCTTGAAGGAAACAGGTCAAAACATTCTGCTGATTCAGGGAAAGAATCTTCTGTAAGCATGCCAGCTACTGACAAGGAAGAACCAAAGAAACCTTTGAATGAGTTCAAAAATATCCCTAATGTAGAGAAGACCACAGCTAGGGAATCTCTTAGCAGACCTAATAATTATCCATATACGCATGGAAGATCTCCTTCATGGACTGAAGGGATCAGTTCCCCTGCAGTACATAGAATGAAAGTCAAAGATGTTTCCCAATACATGATTGATGCTGCAAAGGAGAACCCAAACTTAGCTCAAAAACTTCATGATGTTTTACTTTCAAGTGGTATTGTTGCTCCTCGAAACTTATTTTCTGAAATTTATCATGAGCAGTTAGGTTCCCCAACTGAGGCCAAATTTCCAACTGAAGAAAAAGATGAATATAAACAGGAAAATGTACAGCAAAAGGCTAATTTTGATGATAATCTAGGTCCTGCTAAATTTTTGCCTCCATTGCATCCCAATAGAGTTCATTCCAAAGCAAATCCTAGGAGTCAGCTGGAGCATTCTAAGCCTATCGAAGGTTTAGGAATAGGTCTTCCTCTTCAAACAAGGGAATCTCCTGGACAGCATGCGTCGTCTCAGGCTGAAGCAACTGAGGTCAAGTACGGGAAAAATGTCCCAGTTGCTGCTGCAGCGGCTGCTGCCGCTGCTGTTGTTGCATCTTCAATGGTAGTTGCTGTGGCAAAGTCAGGCAGCGACTCAAATTTTGAGATTCCTGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTGGTAGCAACCACTGCTGCTGTCAATAAACAGTGTGAGCAGGGTAGTCGAAGTGATGGAGATACAGAAGGTTCAGGTTGTGAGCCAAAGGGTAGTGGTGATGGAGAAGGGGAGAGAAAATCTGATAGATCAGTTGGTAATGATAGCTCAAAATCTGATTCTGCGCTAGATGATGTTGCTGAGTATGACATTCCCTGGGAGGAAATCACAGTGGGTGAGCGTATCGGACTAGGATCATATGGAGAAGTGTATCGTGGTGAATGGCATGGAACTGAAGTAGCTGTAAAGAGGTTTCTAGATCAAGGTATCTCTGGTGAAGCCCTCGAAGAAATAAAAAAAGAGGTCCAAATAATGAGAAGACTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCTGTAACTCGACCGCCAAATCTTTCAATCGTAACTGAATTTCTTCCAAGAGGGAGTTTGTATAGATTAATTCACCGACCTAACAATCAATTAGATGAGCGAAGGCGGTTGAGGATGGCCCTGGATGCTGCTAGAGGAATGAACTATTTACACAACTGCACTCCTGTGATAGTACATCGTGATTTGAAGTCCCCAAATCTTCTCGTTGACAAAAACTGGGTTGTAAAGGTATGTGATTTTGGATTATCACGGATGAAACATAGTACATTCCTTTCTTCCAGATCAACTGCAGGAACAGCTGAGTGGATGGCTCCAGAAGTGTTGCGAAATGAACTTTCAGATGAAAAGTGTGATGTTTATAGCTATGGGGTCATATTATGGGAACTGTGTACTTTGAAGCAACCCTGGGGAGGAATGAATCCGATGCAAGTTGTCGGTGCTGTGGGTTTTCAACATCGCCGTCTTGACATTCCAGATGATCTGGACCCTGCCGTTGCAAACATTATCAGACAATGTTGGCATACAGATCCAAAGTTGAGACCTTCTTTTGCTGAGATCATGGCTGCGCTGAAGCCATTGCAGAAGCCAATTACAGGTTCTCAAGTGCATAGACCAAGTGCTCAGTTATCAAGAGTTGCTGAAGACCCTGCAGGATAG 3021 0.4393 MKNILKKFHIMSSNQSEDARGGSTPSKSNKSTDGSSSSPKKLSNWLHSVSNRQCPSPPSPSPARAERVEPSDLVSSAGGLDVASDSVKCDSGSSTSRDPEVEEEYQIQLALQLSAKEDPEAVQIEAVKQISLGSSDTDNPPAEVVAYRYWNYNALGYDDKISDGFYDLYGILTESTSTRMPSLVDLQGTPTSDGVTWEAVLVNRVADSNLMKLELKAQELAAKSRKHSEVVVDSNLVHNLAVLVAEYMGGSVEDPESMSRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYTGLVDVAMNFVKIDDGREYIVDLMAAPGTLIPSDSTGSHAEYDESPFVATPSRDLDSSHIASFSSGAGSSSEETSSFGILEGNRSKHSADSGKESSVSMPATDKEEPKKPLNEFKNIPNVEKTTARESLSRPNNYPYTHGRSPSWTEGISSPAVHRMKVKDVSQYMIDAAKENPNLAQKLHDVLLSSGIVAPRNLFSEIYHEQLGSPTEAKFPTEEKDEYKQENVQQKANFDDNLGPAKFLPPLHPNRVHSKANPRSQLEHSKPIEGLGIGLPLQTRESPGQHASSQAEATEVKYGKNVPVAAAAAAAAAVVASSMVVAVAKSGSDSNFEIPVAAAATATAAAVVATTAAVNKQCEQGSRSDGDTEGSGCEPKGSGDGEGERKSDRSVGNDSSKSDSALDDVAEYDIPWEEITVGERIGLGSYGEVYRGEWHGTEVAVKRFLDQGISGEALEEIKKEVQIMRRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVYSYGVILWELCTLKQPWGGMNPMQVVGAVGFQHRRLDIPDDLDPAVANIIRQCWHTDPKLRPSFAEIMAALKPLQKPITGSQVHRPSAQLSRVAEDPAG* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0029 1006 MobiDBLite consensus disorder prediction 373 396 - -
Lja4g0029 1006 Pfam Protein tyrosine and serine/threonine kinase 727 978 IPR001245 GO:0004672|GO:0006468
Lja4g0029 1006 MobiDBLite consensus disorder prediction 1 102 - -
Lja4g0029 1006 SUPERFAMILY Protein kinase-like (PK-like) 714 976 IPR011009 -
Lja4g0029 1006 Gene3D Transferase(Phosphotransferase) domain 1 805 989 - -
Lja4g0029 1006 MobiDBLite consensus disorder prediction 349 368 - -
Lja4g0029 1006 CDD STKc_MAP3K-like 732 978 - -
Lja4g0029 1006 MobiDBLite consensus disorder prediction 669 713 - -
Lja4g0029 1006 MobiDBLite consensus disorder prediction 552 605 - -
Lja4g0029 1006 MobiDBLite consensus disorder prediction 8 54 - -
Lja4g0029 1006 PRINTS Tyrosine kinase catalytic domain signature 886 896 IPR001245 GO:0004672|GO:0006468
Lja4g0029 1006 PRINTS Tyrosine kinase catalytic domain signature 949 971 IPR001245 GO:0004672|GO:0006468
Lja4g0029 1006 PRINTS Tyrosine kinase catalytic domain signature 839 857 IPR001245 GO:0004672|GO:0006468
Lja4g0029 1006 PRINTS Tyrosine kinase catalytic domain signature 800 813 IPR001245 GO:0004672|GO:0006468
Lja4g0029 1006 PRINTS Tyrosine kinase catalytic domain signature 905 927 IPR001245 GO:0004672|GO:0006468
Lja4g0029 1006 Pfam Ethylene-responsive protein kinase Le-CTR1 142 345 - -
Lja4g0029 1006 MobiDBLite consensus disorder prediction 689 704 - -
Lja4g0029 1006 SMART serkin_6 726 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0029 1006 ProSiteProfiles Protein kinase domain profile. 726 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0029 1006 ProSitePatterns Protein kinases ATP-binding region signature. 732 753 IPR017441 GO:0005524
Lja4g0029 1006 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 995 - -
Lja4g0029 1006 MobiDBLite consensus disorder prediction 985 1006 - -
Lja4g0029 1006 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 995 - -
Lja4g0029 1006 MobiDBLite consensus disorder prediction 431 463 - -
Lja4g0029 1006 MobiDBLite consensus disorder prediction 373 463 - -
Lja4g0029 1006 Coils Coil 203 223 - -
Lja4g0029 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Lja4g0029 1006 Gene3D Phosphorylase Kinase; domain 1 719 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0029 Lja-Chr4 247814 257180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0029 1 993 MAP Kinase Kinase Kinase AT1G73660 63.422 0.0 1149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lja4g0029 PK_Tyr_Ser-Thr 4.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0029 - - gmx:100778331 1538.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0029 4 247814 257180 Lja4g0029 4 247814 257180 ECH
Lja4g0029 4 247814 257180 Lja2g2180 2 24794205 24805795 PCT