Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0021 ATGTGGATGGTGGGTTACAATGAAAGTGGTGCTGAATTCAACATGGCTGATTATCCATTCAATGGAAGAAAACTCAGGCCTCTCATGCCAAGGCCAGTGAGTACTTCTCCAAACAACACTAATTCAACTACAAACACCAGTCCTTGCTTAAGAACCATTCATCATGGAAATGATTTCTTTTCACAATATCAGAATCTGGCATCAGTGACAGAGCAGAACAAGAGAGAGTTCAACACTCCACCCGTTGTGGTGAGCTCAAGGTGGAATCCTACACCAGAACAGCTAAGGGCACTGGAAGAATTGTACAGAAGAGGAACAAGAACACCATCTGCAGAACAAATCCAGCAAATCACAGCACAGCTTAGAAGGTTTGGGAAAATTGAAGGGAAGAACGTTTTCTATTGGTTTCAGAATCACAAAGCAAGAGAAAGGCAGAAGCGCCGCCGTCAAATGGAATCAGAAGCTGAGGGTCCGCCCCGTGACTTTGAAAGTTCTCATCATGACAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACAACTGGCCATCCTCCACAAACTGCACTAGTACTCTTGCAGAGGAATCTGTTTCAATTCAAAGTGCAGCAGCAAAAGCAGTGGTTGCTGCAGAGTGCAGCAGAACAGATGGATGGCTCCAATTCGATGAAGGGGAATTACAGCAGCAAAGAAGAAACTTTATGGAAAGGAATGCCACGTGGCGCATGATGCAGTTTCCTTGTCCTCCTCAACCTCCCCACTTCATTAACACACCTCCTCAATATGCCTCTACAACTAGCATGGCCACAGTAACAGCAGCTAGACTCATGGACCAAAAACTCATTAAGACTCATGCAGATCTCAGCTTCTTCATTTCACCTCACACCAGAGAAAACAACAGCATTATCCACTTAAGCAGTTTCACCACTGAGGATAATGTTGAATCTCAAACCCTTCAACTTTTCCCCTTGCGGAATGGAGATGGTAGCAGTGAAAACAGCAATCAACATCACAAAGAGACAGAGATATCGGTTTCAGCAATGAATGCACCAAGCCAGTTTTTTGAGTTTCTACCATTGAAGAAGTACTGA 1107 0.4417 MWMVGYNESGAEFNMADYPFNGRKLRPLMPRPVSTSPNNTNSTTNTSPCLRTIHHGNDFFSQYQNLASVTEQNKREFNTPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESEAEGPPRDFESSHHDKKDLGASRTVFEVEQTKNNWPSSTNCTSTLAEESVSIQSAAAKAVVAAECSRTDGWLQFDEGELQQQRRNFMERNATWRMMQFPCPPQPPHFINTPPQYASTTSMATVTAARLMDQKLIKTHADLSFFISPHTRENNSIIHLSSFTTEDNVESQTLQLFPLRNGDGSSENSNQHHKETEISVSAMNAPSQFFEFLPLKKY* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0021 368 Gene3D - 84 146 - -
Lja4g0021 368 MobiDBLite consensus disorder prediction 144 171 - -
Lja4g0021 368 ProSiteProfiles 'Homeobox' domain profile. 91 146 IPR001356 GO:0003677
Lja4g0021 368 SUPERFAMILY Homeodomain-like 86 151 IPR009057 -
Lja4g0021 368 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 12 366 IPR044555 GO:0003700|GO:0099402
Lja4g0021 368 MobiDBLite consensus disorder prediction 147 171 - -
Lja4g0021 368 CDD homeodomain 87 147 IPR001356 GO:0003677
Lja4g0021 368 PANTHER WUSCHEL, PUTATIVE-RELATED 12 366 - -
Lja4g0021 368 Pfam Homeodomain 86 145 IPR001356 GO:0003677
Lja4g0021 368 SMART HOX_1 83 150 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0021 Lja-Chr4 173863 176048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0021 1 366 Wox Gene Family AT3G18010 39.850 8.73e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja4g0021 Homeodomain 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0021 - - gmx:100777274 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2184 2 24836338 24840596 Lja4g0021 4 173863 176048 ECH
Lja4g0021 4 173863 176048 Lja4g0021 4 173863 176048 ECH