Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0019 ATGCTAACATCTACACAATATGAAACATTTTCAAAGGATTTTCTCATGGGAGGAGTAGCAGCAATCATATCCAAGAGTGCAGTGGCACCAATTGAGAGAGTCAAGCTTTTATTGCAAAACCAAAATGAATTGATTAAAAGAGGACGACTCAAAAAACCATACCTGGGTGTGTCTAATGGCTTTAAAAGGGTTTTCCTGGAAGAGGGTCTCATTGCTTTTTGGAGAGGTAACCAGGCCAATGTTATAAGATATTTCCCCACACAGGCTTTCAATTTTGCATTCAAAGGTTACTTCAAAAGCATCTTTGGATATTCCAAAGAGAAAGACGGGCACATTAAGTGGTTTGCTGGGAATGTGGCTTCAGGCAGTGCTGCAGGAGCGACTACTTCACTGCTTTTGTATCATTTAGACTATGCACGTACGCGATTGGCTACTGATTCACTGGAGTGCCGTGCTACTGATCAGCGCCAGTTTAAAGGACTAGTTGATGTTTACCGTAAAACCTTATCAAGTGATGGAATTGCTGGCTTGTACAGGGGATTTGGGGTTTCAATATTGGGAATCACCTTGTATCGAGGGATGTACTTTGGGATCTATGACACTATGAAGCCCCTTGTTTTAGTTGGGCCTTTTGAGGGGAAGTTTTTTGCTAGTTTCTTGCTAGGTTGGAGCATCACAACTTTCTCGGGTGTTTGTGCGTACCCTTTTGACACTTTGCGCCGACGGATGATGATAACCTCTGGACATCAAAACAAGTACTCTAATGCAATACATGCATTTCGTGAGATTGTTCAACAAGAGGGTTTTTCAGCTCTGTTTCGAGGAGTAACAGCAAATATGCTTCTTGGTATGGCTGGAGCTGGGGTGCTTGCCGGGTACGATCAGCTGAACCGTATGTCGTCTAGACTCAGTCATTATGATGAAACGAAACAAAGAGTTCTGAAATGA 948 0.4272 MLTSTQYETFSKDFLMGGVAAIISKSAVAPIERVKLLLQNQNELIKRGRLKKPYLGVSNGFKRVFLEEGLIAFWRGNQANVIRYFPTQAFNFAFKGYFKSIFGYSKEKDGHIKWFAGNVASGSAAGATTSLLLYHLDYARTRLATDSLECRATDQRQFKGLVDVYRKTLSSDGIAGLYRGFGVSILGITLYRGMYFGIYDTMKPLVLVGPFEGKFFASFLLGWSITTFSGVCAYPFDTLRRRMMITSGHQNKYSNAIHAFREIVQQEGFSALFRGVTANMLLGMAGAGVLAGYDQLNRMSSRLSHYDETKQRVLK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0019 315 PRINTS Adenine nucleotide translocator signature 10 22 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja4g0019 315 PRINTS Adenine nucleotide translocator signature 218 234 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja4g0019 315 PRINTS Adenine nucleotide translocator signature 87 99 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja4g0019 315 PRINTS Adenine nucleotide translocator signature 113 126 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja4g0019 315 PRINTS Adenine nucleotide translocator signature 54 75 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja4g0019 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 299 IPR018108 -
Lja4g0019 315 Gene3D Mitochondrial carrier domain 11 303 IPR023395 -
Lja4g0019 315 SUPERFAMILY Mitochondrial carrier 8 296 IPR023395 -
Lja4g0019 315 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Lja4g0019 315 PRINTS Mitochondrial carrier protein signature 178 196 IPR002067 GO:0055085
Lja4g0019 315 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Lja4g0019 315 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Lja4g0019 315 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Lja4g0019 315 PRINTS Mitochondrial carrier protein signature 76 96 IPR002067 GO:0055085
Lja4g0019 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 101 IPR018108 -
Lja4g0019 315 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 5 310 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja4g0019 315 Pfam Mitochondrial carrier protein 214 299 IPR018108 -
Lja4g0019 315 Pfam Mitochondrial carrier protein 9 103 IPR018108 -
Lja4g0019 315 Pfam Mitochondrial carrier protein 114 206 IPR018108 -
Lja4g0019 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 205 IPR018108 -
Lja4g0019 315 PANTHER ADP,ATP CARRIER PROTEIN ER-ANT1 5 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0019 Lja-Chr4 154169 157550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0019 8 300 Antiporters AT5G17400 75.768 3.34e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0019 K05863 - gmx:100798418 547.74