Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0012 ATGTCTTCTCTCTTAGATGATTGCAGAGAGCACTTGGTGCAGGTGGATGGCTACGCTGCTAATGGAAACGCCACCAAACCCAAATTCCACATAACCAATCTCACCAAATTCTCCGACGATGGGGTTCCCATACTCAAAGGCATCCACCTTGACATCCCAAAGGGTGTCATCGTTGGGGTCATAGGCCCAAGTGGCAGCGGAAAGTCAACGCTCTTGAGGGCCCTTAACCGTCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGCCCGCGACATCTGCCATCTCGACGTTCTCTCCCTCCGCCGCAAGGTTGGGATGCTCTTTCAGCTCCCTGCCCTCTTTGAAGGCACGGTTGCAGACAATGTGAGGTATGGCCCGCAACTAAGAGGACAGAAGCTAACCGATGATGAGGTCCGTAAGTTGCTCATAATGGCTGACCTCGATGCTTCTTTCATGGATAAATCTGGTGCTGAGCTCTCTGTGGGTCAAGCTCAGAGAGTTGCACTTGCCAGGACTTTAGCAAATTCACCAGAGGTTTTGCTGTTGGATGAGCCAACTAGTGCCTTAGATCCAATATCCACAGAGAATATTGAGGAGGCCCTGATGAAGCTGAATAAGAATCAGGGCATGACACTGATCATGGTCTCTCACAGCATCAAACAAATCCAGAGGATAGCTGACATTGTGTGCCTGCTTGTTGATGGTGAAATTGTTGAAGTTCTGGAGCCTCATAAACTCTCTGAAGCCAAACATCCCATGGCACAAAGGTTCCTTGAACTAAGTTCTTAG 792 0.5025 MSSLLDDCREHLVQVDGYAANGNATKPKFHITNLTKFSDDGVPILKGIHLDIPKGVIVGVIGPSGSGKSTLLRALNRLWEPPSASVFLDARDICHLDVLSLRRKVGMLFQLPALFEGTVADNVRYGPQLRGQKLTDDEVRKLLIMADLDASFMDKSGAELSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEEALMKLNKNQGMTLIMVSHSIKQIQRIADIVCLLVDGEIVEVLEPHKLSEAKHPMAQRFLELSS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0012 263 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 9 263 IPR005670 GO:0005315|GO:0016020|GO:0035435
Lja4g0012 263 SMART AAA_5 54 237 IPR003593 -
Lja4g0012 263 Pfam ABC transporter 45 188 IPR003439 GO:0005524
Lja4g0012 263 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 9 263 - -
Lja4g0012 263 Gene3D - 28 262 IPR027417 -
Lja4g0012 263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 249 IPR027417 -
Lja4g0012 263 ProSitePatterns ABC transporters family signature. 160 174 IPR017871 GO:0005524
Lja4g0012 263 CDD ABC_PstB_phosphate_transporter 29 247 IPR005670 GO:0005315|GO:0016020|GO:0035435
Lja4g0012 263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 29 260 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0012 Lja-Chr4 107320 109153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0012 42 241 Calmodulin-binding Proteins AT2G36910 33.981 4.83e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0012 K02068 - gmx:100791365 425.246