Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0006 ATGGCCAGGGTAGACAGGACAGTCAGAAAAAAGAGCCTAGAGAGTCTAATGGACATGCCGCACAAACCAGAAACCGCAAGAAATGTGAAGCAACTGATGCCCCAAAAGTCCATTCCTGGCTATGGCCTGGAATTCAGTAACCTCTCGTATAGTATCATAAAGAAGCAGAAAAAGGATGGAGTTTGGATCAAGAAAGAAGCATATCTTCTTCATGATATCTCTGGCCAAGCAATAAAAGGTGAAATCATGGCAATCATGGGGCCTAGTGGCGCTGGAAAATCCACCTTTCTTGATGCCTTGGCGGGGCGAATTGCAAAAGGGAGTCTAGAAGGTTCTGTTAGAATTGATGGAAAGCCAGTATCTACAAGCTACATGAAAATGGTGTCTTCATATGTGATGCAAGATGATCAGCTCTTCCCTATGTTAACAGTTTTTGAAACATTTATGTTTGCGGCTGAAGTTAGGCTTCCTCCTTCTATCTCAAGGGACGAAAAGAAGAAAAGGGTTTATGAACTCCTTGATAAACTGGGCTTACAGAGTACTACGCATACCTATATTGGTGACGAGGGAAGGAGAGGAGTGTCAGGAGGGGAACGGCGAAGAGTATCTATTGGCATAGATATCATTCATAAGCCAGCACTTCTGTTTCTGGATGAACCTACCTCAGGACTTGATTCAACAAGTGCTTACAGTGTAGTGGAAAAGGTTAAAGACATAGCTCGAGGTGGTAGCATTGTCCTCATGACCATACATCAGCCTTCATTTAGAATTCAAATGCTCCTGGACAAGATCACCGTCCTTGCAAGGGGAAGACTGATATACATGGGAAAGCCAGATGCACTTCAGTCTCATCTTTCCGGATTTGGAAGGCCTGTGCCTGATGGAGAAAACAGTATTGAGTATCTCCTAGATGTCATAACTGAATATGATCAAGCAACAGTTGGGCTTGACCCCCTTGTCCAATACCAGCTTGATGGCCACAAACCTGACCCAGCAGCTATGACTCCTGTTCGAAAAACTACACCATATAGAAGAAACACCCCTGCATCTAAACACATGATTAGCCTACGTAGCCAAGGATTTACTGCTGGAACACCACAACCTGATTCGGCACAGTTTGGTTATCATGATGAGGAGGAGGAGGAGGATGATGAGAACTTTGATAACTCCCTTGAAAGGAGAAGTGCTCATACACCAAGGAAGGCTATGACTAGTGGTGTTTACCCACGTTTGGCTTCTCAGTTCTACCAAGATTTCTCAGCAAAAGATTTCTCTGTTTGGCTTTACAATGGTGTAGTAGGAACCCCCCGTCGCCAACCATCATGGACTCCAGCAAGAACTCCAGGATGGACACCTGCAAAAACACCCATGTCAGGACCAAGAAGTTTCATTTCCAACCAAAATTCTGCAGCTTATCAGGATCCTAATCACCCCAAAACTCCTGCAGTGGTTAACCAGCCACTAGACTACTCTGCCAGTTCATATGAACCTTCATATGAAGAGTTTGAGATTGAGGAAGTGCTTGATGAGCCAATCCATGGTCACAAGTATGCAAACCCATGGTGGCGTGAGATTGCAGTGCTCTCGTGGCGAACATTACTCAATGTAATGCGCACCCCAGAACTCTTCCTCTCCCGTGAGATTGTGCTAACTGTCATGGCACTTATCTTGTCCACCATTTTCGGGAATCTGAGTGATCTAAGTTTCAAAGACATCAATAAGCTCCTTAATTTCTACATCTTTGCAGTATGCCTTGTTTTCTTTTCTTCCAATGATGCAGTCCCATCTTTTATCATGGAAAGGTTCATCTTCATCAGGGAGACTTCACACAATGCTTACCGTGCTTCTTCATATGTCATTTCTTCCCTCATTGTTTACCTCCCATTTTTCGCAGTTCAAGGGCTCACCTTTGCTGCCATAACCAAAGTAATGCTCCACTTGAAAAGTAGTCTCTTCAATTTCTGGATAATACTTTATGCCTCCCTCATCACTACCAATGCATATGTGATGCTTGTTAGTGCACTTGTGCCGAGTTACATCACAGGGTATGCAGTTGTCATTGCCACAACCGCACTCTTCTTTTTGACCTGTGGTTTCTTCCTCAAGCAAACTCAGATACCCATTTACTGGAAGTGGCTCCACTATATTTCTGCAATCAAATACCCATTTGAGGCGTTACTGATAAATGAATTCAAGAACGACCGCGGCTGCTACATAGGAAGCAAAATAGAATTATCACCTGGACCATTAGGAGATGTGAAGCCCAGCAAACATCATAACGCTACTCTGCCCCCTAACTGCTTATTAGGAGAAGATGTCTTGTCCACCATGGATATCACCATGGAACACATTTGGTATGACATCTTAATTCTGCTAGCTTGGGGAGTTCTTTACAGGTTCTTCTTCTACTTGGTTTTGAGATTTTATTCCAAAATTGAGAGAAAATGA 2448 0.4363 MARVDRTVRKKSLESLMDMPHKPETARNVKQLMPQKSIPGYGLEFSNLSYSIIKKQKKDGVWIKKEAYLLHDISGQAIKGEIMAIMGPSGAGKSTFLDALAGRIAKGSLEGSVRIDGKPVSTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDKLGLQSTTHTYIGDEGRRGVSGGERRRVSIGIDIIHKPALLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIVLMTIHQPSFRIQMLLDKITVLARGRLIYMGKPDALQSHLSGFGRPVPDGENSIEYLLDVITEYDQATVGLDPLVQYQLDGHKPDPAAMTPVRKTTPYRRNTPASKHMISLRSQGFTAGTPQPDSAQFGYHDEEEEEDDENFDNSLERRSAHTPRKAMTSGVYPRLASQFYQDFSAKDFSVWLYNGVVGTPRRQPSWTPARTPGWTPAKTPMSGPRSFISNQNSAAYQDPNHPKTPAVVNQPLDYSASSYEPSYEEFEIEEVLDEPIHGHKYANPWWREIAVLSWRTLLNVMRTPELFLSREIVLTVMALILSTIFGNLSDLSFKDINKLLNFYIFAVCLVFFSSNDAVPSFIMERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAAITKVMLHLKSSLFNFWIILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKQTQIPIYWKWLHYISAIKYPFEALLINEFKNDRGCYIGSKIELSPGPLGDVKPSKHHNATLPPNCLLGEDVLSTMDITMEHIWYDILILLAWGVLYRFFFYLVLRFYSKIERK* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0006 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 285 IPR027417 -
Lja4g0006 815 MobiDBLite consensus disorder prediction 330 349 - -
Lja4g0006 815 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 294 IPR003439 GO:0005524
Lja4g0006 815 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524
Lja4g0006 815 MobiDBLite consensus disorder prediction 438 467 - -
Lja4g0006 815 SMART AAA_5 79 279 IPR003593 -
Lja4g0006 815 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 809 - -
Lja4g0006 815 Pfam ABC transporter 70 222 IPR003439 GO:0005524
Lja4g0006 815 CDD ABCG_EPDR 43 276 - -
Lja4g0006 815 Pfam ABC-2 type transporter 524 731 IPR013525 GO:0016020|GO:0140359
Lja4g0006 815 Gene3D - 42 288 IPR027417 -
Lja4g0006 815 PANTHER ABC TRANSPORTER 3 809 - -
Lja4g0006 815 MobiDBLite consensus disorder prediction 359 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0006 Lja-Chr4 60959 69552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0006 19 281 Calmodulin-binding Proteins AT2G36910 24.436 5.23e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0006 K05681 - gmx:100819497 1315.44