Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0004 ATGAGTTTGCAGAGGAGGGATGATAGGTACAGGAGGGTGCAACGAGTTCGTAATCCAGCATCCACCAAAAACAACCACTGCCAAACACAATTACATGAAAATGGTGATGTTGGTTGCTCAAATCCACCTAGAAGTCGTTGTGAAGAGGAGGAGAATTTACCTCACCTGCTTCAAGAGATTCAGGACAAGCTCACCAAAGACGATGTGGAATGCATGATTTGCTATGACAAGGTTTGCAGGTCTGCTCCAGTCTGGTCTTGCTCCAGTTGCTACTCCATATTTCACCTACATTGTGTAAAGAAGTGGGCTCGAGCACCTTCTTCCATTGATTTGTCCGTAGAGATAAAGATTAACTGGCGCTGCCCTGGTTGCCAGTCCGTGCAACTCACATCATCCAAGGAGATCAGCTATGTTTGCTTCTGTGGAAAGATACCAGACCCACCATGTGACTTTTATCTCACACCGCATTCATGTGGAGAACCATGTGGGAAGCCTCTTAGTGATCTTAAGTTCAAGAATAAGGAGGAGGAGGATCATCTTTGCCCTCATCTTTGCGTCTTGCAATGCCACCCCGGTCCATGCCCTCCTTGCAAGGCATTTGCTTCACCATGTTTGTGTCCTTGCGGGAAGCAAACCATCACCACTCGTTGCTCTGACCGCCCCACCTGTGGCCACCGTTGCAATAAGCTTCTTCAATGCGCCCGTCATTGTTGTCAGCAAATTTGCCATTTGGGTCCTTGTGGCCCCTGCCGTTTTCCAATCAACGCCTCTTGCTTTTGCAACAAAAAGATGGAGGTTATTCTTTGCGGGGACTTGACAGTGAAAGGTGAATTTGAAGCACAAGGTGGAGCTTTTTCTTGCAGTTCCACGTGTGGAAAGAAACTTGCTTGTGGCAATCATGCCTGTACTGAGACTTGTCACCCAGGAAGTTGTGCAGAGTGTATCTCGTCAATAACTCATGTTAAAACATGTTGTTGTGGGAAAGCTAAATTGGAGGAGCAACGACATAGTTGTTTAGACCAAATTCCCACGTGTTCACAAGCATGTGGCAAGTCCTTGCCTTGCGGGATGCATCAATGTAAACAGGCTTGTCATGCATGGGATTGTGCTCCTTGTTTGGTTCTAGTCTCCCAAAGGTGTCGATGTGGCTCAATTTCCCGAGCCGTGGAGTGTTGTAAGACAACATCAGAGAATGAGAAATTCACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAGTTGTGGAAGACACCGATGCAATGAACAATGTTGTCTTCTTTCCAATCCAAATGCAAATTGGGATCCACACCTCTGTTCTGTGCCATGTGGAAAGAAGCTAAGATGCGGCCAGCATGTATGTGAATCCTTATGTCACCGCGGCTATTGTCCACCTTGTGTTGAAACTATATTCACTGATCTGACATGTGCATGTGGAAAGACTTCAATCCCTCCTCCGTTGCCTTGCGGAACAACGCTTCCTTCATGCCAGCTTCCATGCTCTGTTCCTCAGCCTTGCCACCATCCAACCTCCCATAACTGCCATTGTGGAGATTGTCCTCCTTGCACAGTGCTAGTAGCAAAAGAATGTGTTGGTGGGCACGTAGTTGTCAGGAACATGCCTTGTGGTTCAAAAGATATTAGGTGCAATGAGCTCTGTGGGAAGACCAGAAAGTGTGGTTTACATGCTTGTGGCAGAGCATGCCACCCTCCACCTTGTGATGATCACTCTACCGTGGAAGGTGTCCATGGTTCTTGTGGGCAAACATGTGGTGCCCCTAGGAAGGACTGTCGGCACATGTGTATAGCTCCATGTCACCCTTCATCTCCATGTCCAGATATCATATGCCAATTTCAGGTCACAATTGCTTGTTCTTGTGGCCGAATAACAGCAAATGTTCCTTGTGACGCGGGTGGTAGTCGTAGTCGTGCCTTACATGAAGCTTCAATTATTCAAAAATTGCTACTTCAACCATTGGATGACAATGACAAAAAAAGTCCACTGGGACAAAGAAAACTTATGTGCAATGATGAGTGTTCTAAGTGGGAGCGTAAAAGAGTTCTTGCACGTGCTTTTGAGATTACCTCACAAAAGTTGGATTCTCTCCAGTTCGGTGAAAATTATGAATCGCTGGCTTATTTGTTGAGACGTGATTCAAAATGGGTTTTATCAATTGAGGAGAGATGCAAGTTTTTAGTACTTGGAAAGAGTAGAGGAACTACAACACGAGGTTTAAAAGCCCACATTTTCTGCCCCATGCTAAAGGATAAGAGAGATGTAGTGAAGTTGATTGCTGAAAGATGGAAGCTTTCAGTGAGTACATGTGGTTGGGAGGCAAAGAGTTTCATCGTGGTTCATGTTACCAAAAAATCAAGACCTCCAACACGAGTGCTAGGGGTAAAAGGTGTCTATGCGTCTCTTGACTCTCTTCCTCCAGCATTTGATCATTTGGTAGACATGGACCCTCGACTTGTTGTCTCTTTTCTAGAGTTACCGAGGGATGCAGATATTAGTGCACTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATAACAAGAATGCATTGGCTGTTTTTAATGATCATGCCCGAGCGGCAACTGCAATTAGGAGGTTGGATCATGGAACTGTATTCCAAGGTGCTGTTGTGATTGTTGGAAAATCTTCAGTTGTTAAGAATGCATGGGGAGGATCTGGTGGTGCAATGAATGGAGGAGAAACAAAGGGTAATTCATGGAAAAATGTTGTTGGTTGGGGTGAAGATGAGGATTTGGTTACTAATATCCAACCAACTATGTGGAAGAAATTAGAAGCCCCAATATCTGCTTCATTGAATCCTTGGAGTGTCTTAGATCAAGTATCGTCTTCAAGTTCATGA 2880 0.4517 MSLQRRDDRYRRVQRVRNPASTKNNHCQTQLHENGDVGCSNPPRSRCEEEENLPHLLQEIQDKLTKDDVECMICYDKVCRSAPVWSCSSCYSIFHLHCVKKWARAPSSIDLSVEIKINWRCPGCQSVQLTSSKEISYVCFCGKIPDPPCDFYLTPHSCGEPCGKPLSDLKFKNKEEEDHLCPHLCVLQCHPGPCPPCKAFASPCLCPCGKQTITTRCSDRPTCGHRCNKLLQCARHCCQQICHLGPCGPCRFPINASCFCNKKMEVILCGDLTVKGEFEAQGGAFSCSSTCGKKLACGNHACTETCHPGSCAECISSITHVKTCCCGKAKLEEQRHSCLDQIPTCSQACGKSLPCGMHQCKQACHAWDCAPCLVLVSQRCRCGSISRAVECCKTTSENEKFTCEKPCGQKKSCGRHRCNEQCCLLSNPNANWDPHLCSVPCGKKLRCGQHVCESLCHRGYCPPCVETIFTDLTCACGKTSIPPPLPCGTTLPSCQLPCSVPQPCHHPTSHNCHCGDCPPCTVLVAKECVGGHVVVRNMPCGSKDIRCNELCGKTRKCGLHACGRACHPPPCDDHSTVEGVHGSCGQTCGAPRKDCRHMCIAPCHPSSPCPDIICQFQVTIACSCGRITANVPCDAGGSRSRALHEASIIQKLLLQPLDDNDKKSPLGQRKLMCNDECSKWERKRVLARAFEITSQKLDSLQFGENYESLAYLLRRDSKWVLSIEERCKFLVLGKSRGTTTRGLKAHIFCPMLKDKRDVVKLIAERWKLSVSTCGWEAKSFIVVHVTKKSRPPTRVLGVKGVYASLDSLPPAFDHLVDMDPRLVVSFLELPRDADISALVLRFGGECELVWLNNKNALAVFNDHARAATAIRRLDHGTVFQGAVVIVGKSSVVKNAWGGSGGAMNGGETKGNSWKNVVGWGEDEDLVTNIQPTMWKKLEAPISASLNPWSVLDQVSSSSS* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0004 959 CDD RING-CH-C4HC3_NFX1 70 125 - -
Lja4g0004 959 CDD NF-X1-zinc-finger 287 340 - -
Lja4g0004 959 SMART znfxneu3 557 586 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 SMART znfxneu3 413 443 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 SMART znfxneu3 447 466 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 SMART znfxneu3 355 374 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 SMART znfxneu3 504 522 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 SMART znfxneu3 297 316 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 SMART znfxneu3 233 252 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 SMART znfxneu3 181 199 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 SMART znfxneu3 595 616 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 CDD NF-X1-zinc-finger 223 271 - -
Lja4g0004 959 ProSitePatterns Zinc finger PHD-type signature. 71 124 IPR019786 -
Lja4g0004 959 Pfam NF-X1 type zinc finger 183 198 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 Pfam NF-X1 type zinc finger 223 230 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 Pfam NF-X1 type zinc finger 233 251 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 Pfam NF-X1 type zinc finger 557 572 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 Pfam NF-X1 type zinc finger 355 372 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 Pfam NF-X1 type zinc finger 297 314 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 Pfam NF-X1 type zinc finger 512 521 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 Pfam NF-X1 type zinc finger 447 464 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 Pfam NF-X1 type zinc finger 413 423 IPR000967 GO:0005634|GO:0008270
Lja4g0004 959 CDD NF-X1-zinc-finger 437 489 - -
Lja4g0004 959 ProSiteProfiles Zinc finger RING-type profile. 71 125 IPR001841 -
Lja4g0004 959 SUPERFAMILY RING/U-box 60 129 - -
Lja4g0004 959 ProSiteProfiles Zinc finger PHD-type profile. 68 127 IPR019787 -
Lja4g0004 959 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 12 959 IPR034078 GO:0003700
Lja4g0004 959 CDD NF-X1-zinc-finger 345 393 - -
Lja4g0004 959 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 12 959 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0004 Lja-Chr4 40009 43423 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lja4g0004 zf-NF-X1 3.1 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0004 K12236 - gmx:106799700 1432.54