Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5289 ATGCAATTAGCGTCAAACAATGACAAGGAAGAGTGTTCAGAAACCGAACCCATCTTGAATCAGCAAGCATCATCCAGAGAAGACTCCTCCTTCTCCTGTGAAATTATTCCTGCTGCCAACAACAACAACGATTTACAGAATGTTCATGTTGTTGATGAGACTTGTCATCTGGTAAATGCAGATCAGCCACAATGCCGGATATGCCTCGATATTGGAGGAGAAGATTTAATTGCACCGTGCCATTGCAAAGGTACGCAAAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTGCGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGACTAAAATTTCAGTTCCTTGTTGCCAGGGATCACGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTTTACAAATTCTACGGGGATGAACTGAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGTCAAAGAATCAATGAGCGCCACTACCATGTTCTTGCCAAACAAGAACTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGGAAAGAATGTGCCTGAACTTGATCCGAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG 759 0.4216 MQLASNNDKEECSETEPILNQQASSREDSSFSCEIIPAANNNNDLQNVHVVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHGKNVPELDPSHVTELRMLGLY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5289 252 PANTHER OS02G0132300 PROTEIN 2 251 - -
Lja3g5289 252 CDD RING_CH-C4HC3_MARCH 65 113 - -
Lja3g5289 252 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 251 - -
Lja3g5289 252 SUPERFAMILY RING/U-box 60 116 - -
Lja3g5289 252 ProSiteProfiles Zinc finger RING-CH-type profile. 57 119 IPR011016 GO:0008270
Lja3g5289 252 MobiDBLite consensus disorder prediction 1 26 - -
Lja3g5289 252 SMART ringv_2 64 113 IPR011016 GO:0008270
Lja3g5289 252 Pfam RING-variant domain 65 112 IPR011016 GO:0008270
Lja3g5289 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 117 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5289 Lja-Chr3 95215172 95220124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5289 1 211 C3H Transcription Factor Family AT1G50440 61.468 2.01e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5289 - - gmx:100789593 475.707