Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5288 ATGACGTCGACGTCACGAGGTTCCTCCTCCTCCTCCAATGGCCTCCTCCCCGTCACCATCACCAGTAACCACCCTGACGTCGACGTCTCAACTAATGGCGACCACTATGATGACGACGACGACGACGACTTGCTCGTTGATCCAAACGACCCTTTCGACATTACCCAGACCAAGAATGCACCTCCCGAAACCCTCAAGCGTTGGCGACAAGCAGCATTCGTGCTCAATGCCTCCAGGCGTTTTAGATACACTCTTGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCATGATTCGAGCCCACGCGCAAGTCATAAGAGCAGCTTTGCTTTTCAGATTAGCTGGTGAACGCGAACTAGTGACAAGTACAACAGTGTCATCCTCAACTCATGATGGTGACTATGAAGTTGGGCTTGAACAACTTGTTTCGTTGTCTAAGAATCAGAATATTTCTGCCTTACAACAATATGGTGGGGTTAAAGGATTATCAAAATCACTAAAATCAGATCCGGATAAAGGAATTAATGGAGATGATGTTGATCTATTAAAGAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTCTATGGGAAGCTTGGCAAGACCTGACCCTTATAATATTAATTATAGCAGCTGCGGTGTCTTTGGTTCTTGGAATAAAAACAGAGGGTTTGGAAGAAGGATGGTATGATGGGGGAAGCATTGCGTTCGCAGTTCTTCTTGTCATAGTAGTTACAGCTGTCAGTGATTATCGCCAATCTCTGCAGTTTCAGAACTTGAATTCAGAAAAGCAAAATATACAATTGGAGGCTATTAGAGGTGGCAGAACAATAAAAATATCGATATTTGATATTGTTGTTGGCGATGTAGTACCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTTTTAATCACTGGTCACTCACTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCACAAGGATCACAAAGCACCTTTTTTTATGTCTGGTTGCAAAGTAGCAGATGGATTTGGTGCTATGCTGGTAACCGGTGTTGGTATAAACACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTGCGTTTGAATGGAGTAGCAACTTTTATTGGTATTGTTGGGCTTTCTGTAGCTGTTTTGGTGCTTGCAGTCCTCTTGGGAAGATACTTTTCTGGCCATACGAAAGATTTAGATGGAAATGTGCAATTTATTGCCGGCAAGACTAGTATTAGTGACGCAGTAGATGGGGTCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCTGTGCCTGAAGGCCTACCTTTAGCAGTTACCTTAACCCTGGCATTCTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTACGAAGGCTGTCAGCATGCGAAACTATGGGCTCTGCTACCACAATTTGCAGTGATAAAACTGGAACTTTGACCTTAAATCAGATGACTGTAGTTGAGACATATGTTGGGAGGAAGAAACTAAATCCACCAGATGACAAGTCAAAATTGCATCCAGAAGTTTTATCTCTGATAAATGAAGGCATAGCAGAAAATACAACTGGCAATGTTTTTGTGCCAAAGGATGGTGGAGAGACAGAGGTTTCAGGATCTCCTACTGAGAAGGCAATTCTTTCTTGGGCTGTGAAGTTGGGGGTGAATTTTGATCATATCAGATCAAGTTCAACTATTCTTCACGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTGTGAAACTGCCGGACTCTGCAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTCGGAACATGTACCCAATATCTTGATTCCAATGGTGACCTGCAATCTATTGAAGAAGAGAAGGTATTCTTTAAAAAGGCTATTGATGACATGGCTGCTCGGAGCTTGCGTTGCGTTGCCATTGCATATAGACCATATGAATTGGACAAAATTCCATCTAATGAGGAGGATTTGAACAAGTGGTCCTTACCAGAACACGAGCTTATTTTACTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGATGCTGTGAGGTTATGCACTGCAGCTGGCGTTAAGGTACGCATGGTTACGGGCGACAATCTTCAAACAGCAAAAGCAATAGCTCTGGAGTGTGGAATACTGTTTTCAGATGAAGATGCAATTGAGCCAAATATAATTGAAGGAAAGACATTCAGACAACTATCTGAAAAAGAAAGGGAACAAGTAGCCAAGAAAATAACGGTGATGGGAAGGTCTTCTCCAAATGACAAGCTTTTGCTCGTTCAAGCACTTCGTAAAGGTGGTGAGGTTGTTGCAGTCACAGGAGATGGCACCAATGATGCTCCTGCGCTTCACGAGGCAGATATTGGTCTTTCTATGGGCATTCAAGGAACTGAAGTTGCCAAAGAAAGCTCAGATATTATAATACTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGCTGGGGGCGTTCTGTTTATGCAAATATTCAGAAATTTATTCAGTTCCAGCTCACTGTTAATGTTGCTGCTCTTGTAATCAATGTTGTGGCTGCAATATCTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTCAACCTCATCATGGACACACTTGGGGCTCTTGCACTGGCTACAGAACCACCAACAGACCGCCTTATGAAAAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACAAACATTATGTGGAGGAACTTGATGGTACAGGCCCATTATCAAGTAATTGTTCTTCTGGTTCTTAACTTCTGCGGTGAAAGTATACTACATCAAGATTCTCAAACACAGACCATACAATTGAAGAATACTTTAATTTTCAACACATTTGTCATGTGCCAAATATTCAATGAGTTCAATGCTCGAAAACCAGAAGAAATGAATGTATTCCGGGGAGTGACTAAGAACCGTCTCTTTGTGGGAATTGTTGGAATGACCTTCGTACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTCACGAGTACAGTTAGGCTTGATTGGAAGTTGTGGCTTGCTTCTCTCTGTATTGGGCTTTTCAGTTGGCCTCTTGCTATAATTGGGAAATTCATTCCAGTTCCAAAAACGCCATTGTCCCGGTCCTTCATGAAGACATTCAGGCGCTTGAAGAAATCTCGAACTGCATAG 3279 0.4242 MTSTSRGSSSSSNGLLPVTITSNHPDVDVSTNGDHYDDDDDDDLLVDPNDPFDITQTKNAPPETLKRWRQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRAHAQVIRAALLFRLAGERELVTSTTVSSSTHDGDYEVGLEQLVSLSKNQNISALQQYGGVKGLSKSLKSDPDKGINGDDVDLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNSEKQNIQLEAIRGGRTIKISIFDIVVGDVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDHKAPFFMSGCKVADGFGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVLVLAVLLGRYFSGHTKDLDGNVQFIAGKTSISDAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAFSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVETYVGRKKLNPPDDKSKLHPEVLSLINEGIAENTTGNVFVPKDGGETEVSGSPTEKAILSWAVKLGVNFDHIRSSSTILHVFPFNSEKKRGGVAVKLPDSAVHIHWKGAAEIVLGTCTQYLDSNGDLQSIEEEKVFFKKAIDDMAARSLRCVAIAYRPYELDKIPSNEEDLNKWSLPEHELILLAIVGIKDPCRPGVKDAVRLCTAAGVKVRMVTGDNLQTAKAIALECGILFSDEDAIEPNIIEGKTFRQLSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDRLMKRSPVGRREPLITNIMWRNLMVQAHYQVIVLLVLNFCGESILHQDSQTQTIQLKNTLIFNTFVMCQIFNEFNARKPEEMNVFRGVTKNRLFVGIVGMTFVLQIIIIEFLGKFTSTVRLDWKLWLASLCIGLFSWPLAIIGKFIPVPKTPLSRSFMKTFRRLKKSRTA* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5288 1092 Pfam Cation transporter/ATPase, N-terminus 159 226 IPR004014 -
Lja3g5288 1092 SFLD C1.7: P-type atpase like 483 860 - -
Lja3g5288 1092 SUPERFAMILY Calcium ATPase, transmembrane domain M 158 1070 IPR023298 -
Lja3g5288 1092 Pfam Cation transporting ATPase, C-terminus 893 1068 IPR006068 -
Lja3g5288 1092 Pfam Ca2+-ATPase N terminal autoinhibitory domain 49 92 IPR024750 GO:0005516
Lja3g5288 1092 Gene3D - 209 1061 - -
Lja3g5288 1092 PRINTS Sodium/potassium-transporting ATPase signature 620 638 - -
Lja3g5288 1092 PRINTS Sodium/potassium-transporting ATPase signature 244 264 - -
Lja3g5288 1092 PRINTS Sodium/potassium-transporting ATPase signature 494 515 - -
Lja3g5288 1092 SUPERFAMILY HAD-like 499 913 IPR036412 -
Lja3g5288 1092 PANTHER CATION TRANSPORTING ATPASE 49 1083 - -
Lja3g5288 1092 Gene3D - 184 377 - -
Lja3g5288 1092 SUPERFAMILY Calcium ATPase, transduction domain A 280 374 IPR008250 -
Lja3g5288 1092 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 508 705 IPR023299 GO:0000166
Lja3g5288 1092 CDD P-type_ATPase_Ca_PMCA-like 183 941 - -
Lja3g5288 1092 Pfam haloacid dehalogenase-like hydrolase 498 822 - -
Lja3g5288 1092 MobiDBLite consensus disorder prediction 1 61 - -
Lja3g5288 1092 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 774 888 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g5288 1092 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 438 531 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g5288 1092 Gene3D - 511 708 IPR023299 GO:0000166
Lja3g5288 1092 ProSitePatterns E1-E2 ATPases phosphorylation site. 503 509 IPR018303 -
Lja3g5288 1092 PRINTS P-type cation-transporting ATPase superfamily signature 808 827 - -
Lja3g5288 1092 PRINTS P-type cation-transporting ATPase superfamily signature 832 844 - -
Lja3g5288 1092 PRINTS P-type cation-transporting ATPase superfamily signature 701 712 - -
Lja3g5288 1092 PRINTS P-type cation-transporting ATPase superfamily signature 723 733 - -
Lja3g5288 1092 PRINTS P-type cation-transporting ATPase superfamily signature 325 339 - -
Lja3g5288 1092 PRINTS P-type cation-transporting ATPase superfamily signature 501 515 - -
Lja3g5288 1092 MobiDBLite consensus disorder prediction 33 48 - -
Lja3g5288 1092 Pfam E1-E2 ATPase 279 479 - -
Lja3g5288 1092 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 136 1070 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lja3g5288 1092 Gene3D - 62 114 - -
Lja3g5288 1092 Gene3D - 498 853 IPR023214 -
Lja3g5288 1092 SFLD p-type atpase 483 860 IPR044492 -
Lja3g5288 1092 SMART Cation_ATPase_N_a_2 157 231 IPR004014 -
Lja3g5288 1092 PANTHER CALCIUM-TRANSPORTING ATPASE 49 1083 - -
Lja3g5288 1092 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5288 Lja-Chr3 95175379 95203112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5288 8 1092 Primary Pumps ATPases AT3G21180 76.746 0.0 1680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5288 K01537 - gmx:100802659 1790.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5288 3 95175379 95203112 Lja3g5288 3 95175379 95203112 ECH