Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5286 ATGGGACTTTTTTGGTGGCTTGTTTTCTTCGTTTCCTTGTTCCATTTGCATTCTGTTTCTTCACTCAACTCAGATGGGGTGACTCTCCTCTCACTCTTGAGTCACTGGACATCCGTGTCTCCTTCCATAAAATCCTCCTGGGTTGCCTCTCATTCCACACCATGTTCATGGGTTGGAGTTCAATGTGACCCTGCCCACCATGTGGTCTCCCTTAACCTCACTAGTTATGGGATCACTGGTCAACTTGGACTTGAAATTGGAAACTTGACTCACTTACAGCACTTAGAGCTCATTGATAACTACCTTAGTGGCCAAATACCTCACACCTTGAAAAACTTAAACCACCTCAACTTTATTAGCCTCTCTACTAATCTACTCACTGGTGAAATTCCTGATTTCTTGACTCAAATCCATGGACTAGAGTTTATTGAACTGTCTTATAACAATCTAAGTGGCCCCATTCCCCCAGATATTGGCAATTTGACTCAGCTCCAGTTCTTGTATCTTCAGGATAACCAGTTGTCTCGGACAATTCCCCCATCAATTGGGAACTGTACCAAATTACAAGAGTTATATTTGGATAGAAACAAGTTGGAGGGTACCCTTCCTCAGAGTCTAAACAATCTCAAGGAGCTTACTTATTTTGATGTCGCCCGCAATAATCTTACAGGTACTATTCCATTGGGTTCTGGCAATTGTAAAAATTTGCTGTTTTTGGATCTCTCATTCAATGTGTTTAGTGGAGGCCTTCCTTCAGCCTTGGGGAATTGTACTAGTTTAACAGAACTTGTTGCTGTGGGCTGTAACTTAGATGGAACGATTCCATCCTCCTTTGGTCTACTCACCAAGCTTTCTAAGCTAACCCTTCCTGAGAATTATTTATCTGGCAAGATACCTCCTGAAATAGGAAACTGCAGGTCTTTGATGGGCTTACATTTGTATTCCAATCGACTCGAGGGGAATATTCCAAGTGAACTTGGAAAACTGAGCAAAATGGAGGACCTTGAACTGTTTAGTAATCAATTGACGGGTGAAATTCCGCTTAGCGTCTGGAAGATTCAACGTCTTCAGTATCTCCTTGTGTACAACAATAGTCTTTCAGGGGAACTTCCTTTGGAGATGACTGAGCTCAAGCAACTGAAAAACATCTCATTGTTTAACAACCAGTTCTCTGGAATCATACCTCAAAGCTTGGGAATTAATAGCAGTCTAGTAGCTTTGGACTTCACAAACAACAAGTTCACAGGCAACCTTCCACCAAATCTTTGTTTTGGGAAGAAGTTGAGCTTGCTACTTATGGGAATCAATCAACTTCAAGGTAGCATACCTCCTAATGTTGGAAGCTGTACAACTCTTACAAGGGTAATTCTCAAACAAAATAACTTCACTGGGCCCCTTCCTGATTTTGATAGCAACCCCAATCTCTATTTTATGGATATCAGCAACAACAAAATCAATGGTGCAATTCCATCAGGTTTGGGAAGCTGCACAAATCTCACTAACTTAAATTTGTCCATGAACAAGTTTACTGGGCTTATACCTTCAGAGCTAGGAAACCTCATGAATCTTCAGATTTTGAGTCTTGCTCACAACAACTTAAAAGGTCCTTTGCCATTTCAGTTGTCAAATTGTGCAAAATTGGAAGAGTTTGATGCAGGATTCAATTTCCTAAATGGTTCGTTGCCATCGAGTCTGCAGAGATGGATGAGGTTAAGCACATTGATTTTAAGTGAGAATCATTTTAGTGGGGGTATTCCCTCTTTCTTGTCAGGATTTAAATTGCTTTCTGAACTTCAGCTTGGTGGCAATATGTTTGGAGGCAGAATTTCTGGATCCATTGGAGCATTGCAGAGTTTGAGGTATGGGTTGAATCTAAGTTCAAATGGGTTGATAGGTGACCTTCCTGCTGAAATTGGAAACCTGAATACTTTGCAAACACTGGATCTATCTCAGAACAATTTGACAGGAAGCATAGAAGTTATTGGTGAACTATCTTCATTACTTCAAATCAATGTTTCATACAATTCTTTTCATGGTCGTGTACCAAAGATGCTAATGAAGAGGCTTAATTCCTCATTGTCATCATTTGTGGGGAATCCTGGGCTATGTATCAGTTGTTCACCATCTGATGGCTCCATTTGCAATGAAAGCAGCTTTCTAAAACCATGTGATAGCAAATCAGCTAATCAGAAAGGCCTCAGCAAAGTTGAAATTGTGCTGATAGCACTTGGATCTTCAATATTTGTTGTCCTGCTGGTTCTAGGACTACTTTGTATTTTTGTTTTTGGCAGAAAATCTAAGCAGGACACTGATATTGCTGCTAATGAAGGTCTTTCGTCCCTTCTTAACAAAGTCATGGAGGCTACCGAAAACCTAAATGATCGGTATATTATCGGCAGAGGAGCCCATGGAGTTGTTTATAAAGCCCTTGTAGGTCCAGACAAAGCTTTTGCTGTAAAGAAGCTAGAATTTTCTGCCAGCAAAGGCAAGAACTTAAGCATGGTCAGAGAAATTCAAACTCTTGGCAAAATCAAGCATCGAAATCTGGTCAAGTTGGTAGACTTTTGGTTGAAGAAAGATTATGGTCTGATTTTGTACAGCTACATGCCAAATGGAAGCCTTCATGATGTTTTACATGAAAAGAACCCACCTGCATCCTTAGAGTGGAATATCCGGTACAAGATAGCAGTTGGAATCGCTCATGGATTGACTTATCTCCATTATGACTGCGATCCTCCCATAGTGCACCGCGACATCAAGCCGAAAAATATTCTTCTGGACTCTGATATGGAGCCTCACATAGGTGACTTTGGCATTGCCAAACTTTTGGATCAGGCTTCTACTTCAAATCCTTCCATATGTGTGCCGGGTACAATTGGTTATATAGCACCAGAGAATGCTTATACAGCAGCAAATAGCAGGGAGTCTGATGTATACAGTTATGGGGTAGTTTTGCTAGCGCTGATAACAAGAAAGAAGGCAGTGGATCCATCATTTGTGGAGGGTACTGATATAGTGAGTTGGGTTAGATCAGTGTGGAATGAAACAGGAGAAATTAACCAAGTTGTTGATTCAAGCCTTTCAGAGGAATTTCTAGATACTCATAAGATGGAAAATGCTACCAAAGTGCTTGTGGTGGCTTTGAGATGTACCGAGCAGGATCCACGCAGGAGACCCACGATGACAGATGTTACCAAGCAATTATCAGATGCTGATCTACGACAAAGAACAAGAAGTAAGAAGCGATAG 3249 0.4097 MGLFWWLVFFVSLFHLHSVSSLNSDGVTLLSLLSHWTSVSPSIKSSWVASHSTPCSWVGVQCDPAHHVVSLNLTSYGITGQLGLEIGNLTHLQHLELIDNYLSGQIPHTLKNLNHLNFISLSTNLLTGEIPDFLTQIHGLEFIELSYNNLSGPIPPDIGNLTQLQFLYLQDNQLSRTIPPSIGNCTKLQELYLDRNKLEGTLPQSLNNLKELTYFDVARNNLTGTIPLGSGNCKNLLFLDLSFNVFSGGLPSALGNCTSLTELVAVGCNLDGTIPSSFGLLTKLSKLTLPENYLSGKIPPEIGNCRSLMGLHLYSNRLEGNIPSELGKLSKMEDLELFSNQLTGEIPLSVWKIQRLQYLLVYNNSLSGELPLEMTELKQLKNISLFNNQFSGIIPQSLGINSSLVALDFTNNKFTGNLPPNLCFGKKLSLLLMGINQLQGSIPPNVGSCTTLTRVILKQNNFTGPLPDFDSNPNLYFMDISNNKINGAIPSGLGSCTNLTNLNLSMNKFTGLIPSELGNLMNLQILSLAHNNLKGPLPFQLSNCAKLEEFDAGFNFLNGSLPSSLQRWMRLSTLILSENHFSGGIPSFLSGFKLLSELQLGGNMFGGRISGSIGALQSLRYGLNLSSNGLIGDLPAEIGNLNTLQTLDLSQNNLTGSIEVIGELSSLLQINVSYNSFHGRVPKMLMKRLNSSLSSFVGNPGLCISCSPSDGSICNESSFLKPCDSKSANQKGLSKVEIVLIALGSSIFVVLLVLGLLCIFVFGRKSKQDTDIAANEGLSSLLNKVMEATENLNDRYIIGRGAHGVVYKALVGPDKAFAVKKLEFSASKGKNLSMVREIQTLGKIKHRNLVKLVDFWLKKDYGLILYSYMPNGSLHDVLHEKNPPASLEWNIRYKIAVGIAHGLTYLHYDCDPPIVHRDIKPKNILLDSDMEPHIGDFGIAKLLDQASTSNPSICVPGTIGYIAPENAYTAANSRESDVYSYGVVLLALITRKKAVDPSFVEGTDIVSWVRSVWNETGEINQVVDSSLSEEFLDTHKMENATKVLVVALRCTEQDPRRRPTMTDVTKQLSDADLRQRTRSKKR* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5286 1082 ProSitePatterns Serine/Threonine protein kinases active-site signature. 914 926 IPR008271 GO:0004672|GO:0006468
Lja3g5286 1082 Gene3D Ribonuclease Inhibitor 473 708 IPR032675 -
Lja3g5286 1082 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 7 156 - -
Lja3g5286 1082 Gene3D Transferase(Phosphotransferase) domain 1 869 1082 - -
Lja3g5286 1082 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Lja3g5286 1082 Gene3D Ribonuclease Inhibitor 373 472 IPR032675 -
Lja3g5286 1082 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 95 1066 - -
Lja3g5286 1082 Pfam Protein kinase domain 797 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5286 1082 Gene3D Ribonuclease Inhibitor 266 372 IPR032675 -
Lja3g5286 1082 Gene3D Ribonuclease Inhibitor 176 265 IPR032675 -
Lja3g5286 1082 MobiDBLite consensus disorder prediction 1055 1082 - -
Lja3g5286 1082 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 7 156 - -
Lja3g5286 1082 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 95 1066 - -
Lja3g5286 1082 SMART LRR_typ_2 520 544 IPR003591 -
Lja3g5286 1082 SMART LRR_typ_2 209 233 IPR003591 -
Lja3g5286 1082 SMART LRR_typ_2 161 185 IPR003591 -
Lja3g5286 1082 SMART LRR_typ_2 186 208 IPR003591 -
Lja3g5286 1082 SMART LRR_typ_2 641 664 IPR003591 -
Lja3g5286 1082 SMART LRR_typ_2 281 305 IPR003591 -
Lja3g5286 1082 SMART LRR_sd22_2 161 193 - -
Lja3g5286 1082 SMART LRR_sd22_2 329 350 - -
Lja3g5286 1082 SMART LRR_sd22_2 641 666 - -
Lja3g5286 1082 SMART LRR_sd22_2 89 115 - -
Lja3g5286 1082 SMART LRR_sd22_2 520 552 - -
Lja3g5286 1082 Gene3D Phosphorylase Kinase; domain 1 762 868 - -
Lja3g5286 1082 Gene3D Ribonuclease Inhibitor 25 175 IPR032675 -
Lja3g5286 1082 ProSitePatterns Protein kinases ATP-binding region signature. 798 821 IPR017441 GO:0005524
Lja3g5286 1082 SMART serkin_6 792 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5286 1082 SUPERFAMILY RNI-like 310 673 - -
Lja3g5286 1082 ProSiteProfiles Leucine-rich repeat profile. 643 665 IPR001611 GO:0005515
Lja3g5286 1082 SUPERFAMILY Protein kinase-like (PK-like) 781 1068 IPR011009 -
Lja3g5286 1082 MobiDBLite consensus disorder prediction 1055 1076 - -
Lja3g5286 1082 ProSiteProfiles Protein kinase domain profile. 792 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5286 1082 SUPERFAMILY RNI-like 67 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5286 Lja-Chr3 95137198 95142151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5286 15 1079 Receptor kinase-like Gene Family AT1G73080 53.224 0.0 1047
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja3g5286 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5286 - - gmx:100778035 1618.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5286 3 95137198 95142151 Lja3g5286 3 95137198 95142151 ECH