Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5284 ATGGCAATTCTTGAGAACAAGAAGAACGAGGAGGAAGAGCAATTCATTTTCAGGTCCAAGCTCCCTGACATCTACATCCCCAAACACCTTCCTCTCCACTCTTACTGCTTCCAAAATCTCCCTGACTTTGCCTCACGACCCTGCCTCATCAACGCCCCCACCGGCGACGTCTACACCTACCACGACGTCGACCTCGCCGCCCGGAGAACCGCCTCCGGCCTCCACAAACTCTGCAACATCCAAAAAGGAGACGTCATCATGATCCTCCTCCCCAACTCCCCTGAATTCGTCTTCTCCTTCCTCGCCGCATCTCACCTCGGCGCCATGGCCACCGCCGCAAATCCCTTCTTCACCGCCGCGGAAATCGCCAAGCAAGCCAAAGCCTCCAACACCAAGCTCCTCATCACCCAATTTTCCTACCACGACAAGGTCAAGGAATTGCCGGATCACAACGTCAAGCTCGTGTTCATCGACGACGATCGTAACGGTAACCGCCATAACCACCTGCATTTCTCACAGCTGATGGAAGCTGAGAGTGAATTGGAATTGGAACAGATCGATCCCGACGATGTGGTGGCGCTGCCGTATTCATCAGGGACAACCGGTCTTCCGAAAGGGGTGATGTTAACGCACAAAGGATTGGTAACAAGCATTGCACAGCAAGTAGATGGGGAGAATCCGAACCTGTTCTACCACTGTGAAGATGTGATTCTTTGTGTTCTTCCTCTGTTTCACATTTACTCTCTGAACTCTGTTTTGCTGTGCGGGCTGAGAGCGAAGGCGGCGATATTGCTGATGCCGAAATTCGAAATCAATGCGTTGCTGAGTTTGGTTGAGAAACACAGGATCACGGTGGCGCCGGTGGTGCCGCCGATTGTTCTGGCGATTGCGAAGTCGCCGGAGCTGAATAAACATGACTTGTCTTCAATTAGGATATTGAAATCCGGTGGAGCACCGCTGGGTAAAGAAGTCGAACAAGCTCTCACCGCCAAATTCCCCAACGCCAAATTCGGTCAGGGATATGGAATGACAGAGGCAGGGCCAGTGTTAACAATGTGCTTAGCATTTGCTAAGGAACCAATTGATGTAAAACCAGGTGCATGCGGAACCGTTGTAAGGAATGCAGAGATGAAGATTGTGGATCCTGAAACTGGCAATTATTTATCTCGAAACCAGTCTGGTGAAATTTGCATAAGAGGTGACCAGATCATGAAAGGTTATCTAAATGATCCAGAGGCTACGGAGAGAACGATAGACAAAGGGGGTTGGTTACATACAGGTGACATTGGTTATATTGACGATGATGATGAGTTGTTCATCGTTGATAGGTTGAAGGAATTGATCAAATACAAAGGATTTCAGGTTGCTCCAGCTGAACTTGAAGCCCTTCTTCTTTCTCATCCCAAAATCTCTGATGTTGCTGTTGTCCCGATGAAGGATGAAGCAGCTGGAGAGGTACCAGTTGCATTTGTTGTGAGATCAAATGGTCACACCGACATAAACGAGGATGAAATTAAGCAGTTTATCTCCAAACAGGTGGTATTTTACAAAAGAATAAACAGAGTATTCTTCATTGATGCAATTCCCAAGTCACCATCAGGCAAAATCTTGCGTAAGAATCTGAGATCAAAGTTAGTAGCTGGTGTTCCAATTTGA 1656 0.4801 MAILENKKNEEEEQFIFRSKLPDIYIPKHLPLHSYCFQNLPDFASRPCLINAPTGDVYTYHDVDLAARRTASGLHKLCNIQKGDVIMILLPNSPEFVFSFLAASHLGAMATAANPFFTAAEIAKQAKASNTKLLITQFSYHDKVKELPDHNVKLVFIDDDRNGNRHNHLHFSQLMEAESELELEQIDPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLFYHCEDVILCVLPLFHIYSLNSVLLCGLRAKAAILLMPKFEINALLSLVEKHRITVAPVVPPIVLAIAKSPELNKHDLSSIRILKSGGAPLGKEVEQALTAKFPNAKFGQGYGMTEAGPVLTMCLAFAKEPIDVKPGACGTVVRNAEMKIVDPETGNYLSRNQSGEICIRGDQIMKGYLNDPEATERTIDKGGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLSHPKISDVAVVPMKDEAAGEVPVAFVVRSNGHTDINEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKNLRSKLVAGVPI* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5284 551 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Lja3g5284 551 Gene3D - 14 445 IPR042099 -
Lja3g5284 551 Pfam AMP-binding enzyme 45 450 IPR000873 -
Lja3g5284 551 Pfam AMP-binding enzyme C-terminal domain 459 535 IPR025110 -
Lja3g5284 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 546 - -
Lja3g5284 551 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 11 546 - -
Lja3g5284 551 SUPERFAMILY Acetyl-CoA synthetase-like 18 546 - -
Lja3g5284 551 Gene3D - 446 547 IPR045851 -
Lja3g5284 551 CDD 4CL 26 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5284 Lja-Chr3 95098256 95103932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5284 3 513 Monolignol Biosynthesis Gene Families AT1G51680 70.019 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5284 K01904 - gmx:547944 858.211