Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5278 ATGAAGCTCACCGTCAAGACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAACCCTCTGATTCTATTATGGCTGTCAAAAAGAATATTGAAGATGTGCAAGGCAAAGATAATTACCCATGTGGGCAGCAATTGCTTATTCACAATGGGAAGGTTTTGAAAGATGAAACTACACTAGCAGATAATAAGGTCTCTGAGGATGGCTTTCTTGTTGTCATGCTTAGTAAGAGCAAGACCATGGGATCTGCTGGCACTTCATCGACTCAGCCTGCTAGCAATCCACCTATATCAGTATCAACACCTAATCCCGCAGCTCCAGTACAAACTCAGTCTGCAAACAATGTTGCATCTGCCACAGATGCCACAACTACGAATGTGACTGCAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAGTAATATTGAGCAGACTATTCAACAAATTATGGACATGGGCGGTGGCAGCTGGGACCGGGATACAGTTAGTCGTGCTCTTCAAGCAGCTTTTAATAACCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGTGGCAGCGGAAGTTGTTGTACCGGCTGCTAATCACCCAAGTAGTCAGACTACTGAAACAGGTGGGGTCAGTGCTGGAGCTGTTCCCGGGGTCCCTAACTCATCTCCTTTGAATATGTTTCCTCAGGAGACAATTTCTGGTGCTGGAGCTGGAGTTGGATCTCTTGACTTCCTGAGGAACAATCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCCCAAATTCTTCAGCCTGTACTTCAGGAGCTGGGGAAGCAGAATCCCAGTCTCTTAAGACTTATTGATGAGCATCATGCTGAGTTTCTCCAGTTAATAAATGAACCCGTTGAGGGTTCTGAAGGTGATATATTTGATCAGCCTGAGCAAGAAATGCCTCATGCCATCAATGTGACACCAGCTGAGCAGGAGGCGATTGGAAGGCTTGAGGCCATGGGATTTGATCGAGCCTCTGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTTGAAAATCCTGGAGATTTTGAGGATTAA 1107 0.4544 MKLTVKTLKGSHFEIRVQPSDSIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTMGSAGTSSTQPASNPPISVSTPNPAAPVQTQSANNVASATDATTTNVTADTYGQAASNLVAGSSNIEQTIQQIMDMGGGSWDRDTVSRALQAAFNNPERAVDYLYSGIPVAAEVVVPAANHPSSQTTETGGVSAGAVPGVPNSSPLNMFPQETISGAGAGVGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLRLIDEHHAEFLQLINEPVEGSEGDIFDQPEQEMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENPGDFED* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5278 368 SMART CBM 241 284 IPR006636 -
Lja3g5278 368 MobiDBLite consensus disorder prediction 80 108 - -
Lja3g5278 368 Gene3D - 138 188 - -
Lja3g5278 368 SUPERFAMILY UBA-like 127 193 IPR009060 GO:0005515
Lja3g5278 368 Pfam XPC-binding domain 243 298 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lja3g5278 368 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 322 362 IPR015940 -
Lja3g5278 368 SMART ubq_7 1 75 IPR000626 GO:0005515
Lja3g5278 368 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lja3g5278 368 Gene3D - 233 299 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lja3g5278 368 Gene3D - 315 363 - -
Lja3g5278 368 Gene3D - 1 80 - -
Lja3g5278 368 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 143 186 IPR015940 -
Lja3g5278 368 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 367 - -
Lja3g5278 368 SMART uba_6 324 361 IPR015940 -
Lja3g5278 368 SMART uba_6 145 185 IPR015940 -
Lja3g5278 368 MobiDBLite consensus disorder prediction 80 95 - -
Lja3g5278 368 Pfam UBA/TS-N domain 145 183 IPR015940 -
Lja3g5278 368 Pfam UBA/TS-N domain 324 359 IPR015940 -
Lja3g5278 368 TIGRFAM rad23: UV excision repair protein Rad23 1 367 IPR004806 GO:0006289
Lja3g5278 368 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lja3g5278 368 PRINTS DNA repair protein Rad23 signature 350 365 IPR004806 GO:0006289
Lja3g5278 368 PRINTS DNA repair protein Rad23 signature 269 291 IPR004806 GO:0006289
Lja3g5278 368 PRINTS DNA repair protein Rad23 signature 318 334 IPR004806 GO:0006289
Lja3g5278 368 PRINTS DNA repair protein Rad23 signature 335 349 IPR004806 GO:0006289
Lja3g5278 368 SUPERFAMILY XPC-binding domain 241 306 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lja3g5278 368 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Lja3g5278 368 CDD Ubl_Rad23 1 74 - -
Lja3g5278 368 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 367 - -
Lja3g5278 368 SUPERFAMILY UBA-like 303 365 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5278 Lja-Chr3 95020935 95026127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5278 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.16e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5278 K10839 - gmx:100804038 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5278 3 95020935 95026127 Lja3g5278 3 95020935 95026127 ECH