Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5277 ATGAATGTTTCCCAAAAATCACCTCTGTGTTCCAATCCCCTCAAAGAAAGCCAGCTCAAACACTGCAACAGCTTACCCTCCAAAGGTGACACCATTCAAATCAATGACCATGACAACAACAACAACAAGGAAAACACGAATAACATTAATGGGTCTTCTTCTTCTCTTCCAAAGTCCAAATCTTTATCCACAGACAGGGTTCTTAAACCCTCCTCACTCCAGTTCTGCATGAAAATGAACGACCCTCTTGATTCCCACCATTCCTCCACCACCTCTTTGAATATCTGGGACTTCTCTGACTCTGAAGCAGCTCCTGCTTCCTCCTGGTCCACTTTGCCCAATAAGTCTTTGATCTGTAGACCCTTGCCTGTAGATATTGGAAGGTGTACATGTGTGATTGTGAAGGAAGCTACGCCACAAGGACTATCTGGGGGCACTTTCTTCTCTCTTTACACCTATGAAGGCCAAGGACGGCAAAATAGGAAACTAGCCGTGGCCCTACACAAGCGGCGGAATGGGAGGTCTCACTTCACCGTGGCTCAGAATTTAAAAGGACTCATGTCCAATTCAGATGAGAGTTTCCTTGGGACGGTAACTGCTAACCTCATGGGCTCAAAATACTGCATTTGGGATCAGGGACATCGTCACCGTTCTCATAGTAAACAACCAAAGCTACCTCTTTCTGTTGTGAGGTATATACCTACAATAGCAACATGCACTGGAAGTCACAGAAGCATGAGAGCATATATACCAAAGCATCAATCTATGTCACTGAAGAACACCACCCAGGCACAACATATTAAAGGATTGCCAATGAATTGGGAGGGGAAATTGGACAAAGTCCATCAACTATTCACAAGGGTTCCACTGTACAACAAGATTTCGAAACAACTTGAGCTTGATTATAGAGATAAAGGAAGGCCAGAACTTAGAATTCAAAGATCCGCGAAAAACTTTCAGCTGACCCTAGAGGAGAACGGGAAGCAAACAATCCTACAGCTAGGGAGGGTGGGAAAATCAAAATTTGTGATGGACTACAGATATCCTTTGACAGGTTACCAGGCGTTTTGTATGTGCTTGGCTTCCATTGATGCAAAGCTGTGTTGCACTGTATAG 1116 0.4427 MNVSQKSPLCSNPLKESQLKHCNSLPSKGDTIQINDHDNNNNKENTNNINGSSSSLPKSKSLSTDRVLKPSSLQFCMKMNDPLDSHHSSTTSLNIWDFSDSEAAPASSWSTLPNKSLICRPLPVDIGRCTCVIVKEATPQGLSGGTFFSLYTYEGQGRQNRKLAVALHKRRNGRSHFTVAQNLKGLMSNSDESFLGTVTANLMGSKYCIWDQGHRHRSHSKQPKLPLSVVRYIPTIATCTGSHRSMRAYIPKHQSMSLKNTTQAQHIKGLPMNWEGKLDKVHQLFTRVPLYNKISKQLELDYRDKGRPELRIQRSAKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCMCLASIDAKLCCTV* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5277 371 Pfam Tub family 120 364 IPR000007 -
Lja3g5277 371 PANTHER TUBBY-LIKE PROTEIN 8 23 369 - -
Lja3g5277 371 PANTHER TUBBY-RELATED 23 369 - -
Lja3g5277 371 Gene3D Tubby Protein; Chain A 114 364 IPR025659 -
Lja3g5277 371 MobiDBLite consensus disorder prediction 25 63 - -
Lja3g5277 371 SUPERFAMILY Tubby C-terminal domain-like 106 370 IPR025659 -
Lja3g5277 371 PRINTS Tubby superfamily signature 327 346 IPR000007 -
Lja3g5277 371 PRINTS Tubby superfamily signature 348 370 IPR000007 -
Lja3g5277 371 PRINTS Tubby superfamily signature 194 218 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5277 Lja-Chr3 95013016 95015741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5277 60 264 TUB Transcription Factor Family AT1G16070 57.273 1.08e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lja3g5277 Tub 2.7e-38 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5277 K19600 - gmx:100803500 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5277 3 95013016 95015741 Lja3g5277 3 95013016 95015741 ECH