Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5276 ATGGCTAAGAAGAAAGGCCTCAAAAACACTAGTACTAGTAATGCTATTGCTACTGCTACTAACACCGCCACCACGACCACCACCACGAAGATGAAGAAGCGTTCACGCAAAAGCACCCCAAGAGACACACCATCACAAAGAAGCTCTGTCTACCGTGGCGTTACAAGGCATAGATGGACAGGTCGATATGAGGCCCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGTATATTTAGGGGCATATGACGATGAAGATGCAGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTATTGGGGCCAAGACACCATCCTCAATTTTCCATTATCAAATTATCAAGATGAGCTTAAGGAGATGGAGAATCAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGTAGCGGTTTCTCTCGAGGAGTCTCCAAATATAGAGGCGTGGCAAGACACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTATTCGGCAACAAGTATCTATACCTCGGAACTTACGCTACACAAGAAGAAGCAGCAACAGCATATGACATGGCAGCCATAGAGTATCGTGGACTTAATGCAGTTACAAACTTTGACCTTAGTCGTTATATCAAATGGCTACATCCAAAGACTCAAGACCAAGACAACGACGAAATTGCTACCAAAAACCCTGAACCAAATGATATTCCTAACTCTGAACTTGAACTTGGGCTCGTCTCACATCAAATTGGGCCAGACATCGGTGAAACCACAACATTAAGGCCTGCTAGTAATAATGGGCCGCGAACATCTTCTGCATTGGGCCTTCTTTTGCAGTCAACAAAATTCAAAGAAATGCTAGAAAGGACTTCAGCTACCGATTATCCTCCACCACCTTCAAAGTCAAACCCTGCTTCTCGTACATTTCCTGATGATATTCAAACATTTTTTGAATGTCATGATGATTCTGGAAGCACCTACATGGAGAGTGATGACATCATATTTGGTGAGCTGAGCTCAATTACTGCACCCATTTTTCATTATGAGCTCAATGCTTAG 1071 0.4286 MAKKKGLKNTSTSNAIATATNTATTTTTTKMKKRSRKSTPRDTPSQRSSVYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEDAAARAYDLAALKYWGQDTILNFPLSNYQDELKEMENQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLHPKTQDQDNDEIATKNPEPNDIPNSELELGLVSHQIGPDIGETTTLRPASNNGPRTSSALGLLLQSTKFKEMLERTSATDYPPPPSKSNPASRTFPDDIQTFFECHDDSGSTYMESDDIIFGELSSITAPIFHYELNA* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5276 356 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Lja3g5276 356 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 337 - -
Lja3g5276 356 MobiDBLite consensus disorder prediction 293 314 - -
Lja3g5276 356 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Lja3g5276 356 SMART rav1_2 50 122 IPR001471 GO:0003700|GO:0006355
Lja3g5276 356 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
Lja3g5276 356 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Lja3g5276 356 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700|GO:0006355
Lja3g5276 356 SUPERFAMILY DNA-binding domain 49 118 IPR016177 GO:0003677
Lja3g5276 356 Pfam AP2 domain 151 202 IPR001471 GO:0003700|GO:0006355
Lja3g5276 356 Pfam AP2 domain 49 108 IPR001471 GO:0003700|GO:0006355
Lja3g5276 356 MobiDBLite consensus disorder prediction 1 53 - -
Lja3g5276 356 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Lja3g5276 356 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Lja3g5276 356 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700|GO:0006355
Lja3g5276 356 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Lja3g5276 356 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 337 - -
Lja3g5276 356 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5276 Lja-Chr3 95007647 95011588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5276 46 214 AP2-EREBP Transcription Factor Family AT5G57390 74.556 6.28e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja3g5276 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5276 K09285 - zju:107429620 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5276 3 95007647 95011588 Lja3g5276 3 95007647 95011588 ECH