Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5265 ATGCCTTCCCGACCCTTCCCTTCTCCAGGTCCCAGTTTTTTCACCAAAACCAGAGTCCTGTTCATAGCACTGACCCTTTCAGCTTCTATTGTGATTTTCTGTTCTGTCCTTTACTTCCTTTACCATCTGTGGCATTCTCTTCTACACAGAACCAAAACTATACCCTTTGATGCAAGTGATCCCTTGAAGCTCCTGAGATTCTCATACAAAGATTTAAAGCAAGCTACCAATGGCTTTGACACTGCCAATGTCATTGGTAAAGGTGGGTCTGGCACAGTTTTTAAGGGAATGCTTAAAGATGGAAACTTGATTGCTGTCAAGTGCCTAGACTCTTTCTCTTTGCAGACAGAGAGAGAGTTTCAAAATGAGCTGCAGATTCTTGGAGGGCTAAGATCGCCATTCCTGGTGACCCTTTTGGGGTATTGTGTGGAAAAGAATAAAAGGGTCTTGGTGTATGAGTATATGCCTAAGAGAAGCTTGCAAGAGTCCCTCTTTGGAGATGAGTGTTTGAGTTTGAGTTGGGAGAGAAGATTTTGCATAATCATGGATGTTGCTAGAGCATTGGAGTTCTTGCACCATGGATGTGATCCTCCAGTGATCCATGGTGATATCAAGCCAAGCAATGTTCTACTTGATGCAGAGCACTGTGGAAAGATCTCAGATTTTGGGCTGTCAAGGATTAAGGTGGAGGGTGATTATGGTGTGGACTTCTTTAGCCAGGACCTATGTAAAAGCCAAGAACTTTCAGGTAATATAACTGCAGAAACTCCTGTTATTGGTACTCCAGTTGATAGTGTTAATGAAGTAGATTTTGCTCAAGCTTTGCAAGCTTCTTCTTCATCCAAAAATAGCAGGACCTGTTATAATGCTAGAACTTTGAACTTGGATTCTTTGAGTTATAATGCCAAAATTGCCAGTGAAAGTGAAAGTAAGACTGTAAATGCAAAGGGAAAGGAAATTTCAACAGTGGTGGATATAGGAGAGGATGATTGGAATAATGAGTTTGTTCGTTGTGATGATGAGTTTTCTAGCATTGATCATAGTAAGGAGTTGACTGGTAATGCTTCTTTGGTAAAGGATTGGTGGTGGAGACAAGATGAAAGTGGAGAACTATGTAGTAAAGACTATGTCATGGAGTGGATAGGGAGTCAGATTTGTCCATCAAACGCTGATTGGGATGATGGTCAGAACAATGCTCAGGAGAAAGCAGAATTGGAAAATTCAAGTCCAATGAATAAAGCCAATGATGATGATGCTAATGGACCCCAACTACAGGAACATGGTATTGGTTATACAAATGTTGTGTTTGATAAGAAAGAACCAAAGGAGAAGAAGAATCAAAGGAAGATGAAAGAGTGGTGGAAAGAAGAGCATCTTGCTGAATTAAGCAAAAAGACTAGTAAGATGAAAAGTCTTAAAACTAAGAGGAAAAAAGGCTTGAAAGTGCCCCATTTTGATTTGGGTAAAAGGTTTTATCTTTGCCAAGGTAAGAACTGTGGAGAGCAGGGTCAGAATGAATGTGATCAAAATGGGGAGTTTAGCTTCAGAAGAGGTTTGAAGAAAAAAAGCACTCGTTCCATTGGAAGTGACATGTGGAGTGGAGACCTTTTCAGCCGGGAGCTCAGCAGCACAACTAGCATGAGAGGGACACTGTGTTATGTAGCACCAGAATATGGAGGGTGTGGGTTCTTAATGGAGAAAGCTGACATTTACAGTTTTGGAGTTTTGGTTCTAGTAATTGTGTCAGGTAGAAGACCATTACATGTTCTTGCATCCCCCATGAAGCTAGAGAAAGCTAACTTGATAAGCTGGTGTAGGAATTTAGCTCAAGCTGGTAACATTTTAGAGCTAGTAGATGAAATATTGAAAGAAGATTACAGCAAGGACCAAGCAAGCTTGTGCATCAACTTGGCACTAACTTGCTTACAGAAAATTCCAGAGTTGCGGCCAGATATCCGGGACATTGTTAAGATTTTGAAAGGCGAAATGGCCCTTCCACCACTTCCATTTGAGTTTTCTCCTTCTCCACCTTCTAAATTATACAGCAGATCAAGGAGGAAACAGAAGGGGAATGCTGAATAG 2082 0.4107 MPSRPFPSPGPSFFTKTRVLFIALTLSASIVIFCSVLYFLYHLWHSLLHRTKTIPFDASDPLKLLRFSYKDLKQATNGFDTANVIGKGGSGTVFKGMLKDGNLIAVKCLDSFSLQTEREFQNELQILGGLRSPFLVTLLGYCVEKNKRVLVYEYMPKRSLQESLFGDECLSLSWERRFCIIMDVARALEFLHHGCDPPVIHGDIKPSNVLLDAEHCGKISDFGLSRIKVEGDYGVDFFSQDLCKSQELSGNITAETPVIGTPVDSVNEVDFAQALQASSSSKNSRTCYNARTLNLDSLSYNAKIASESESKTVNAKGKEISTVVDIGEDDWNNEFVRCDDEFSSIDHSKELTGNASLVKDWWWRQDESGELCSKDYVMEWIGSQICPSNADWDDGQNNAQEKAELENSSPMNKANDDDANGPQLQEHGIGYTNVVFDKKEPKEKKNQRKMKEWWKEEHLAELSKKTSKMKSLKTKRKKGLKVPHFDLGKRFYLCQGKNCGEQGQNECDQNGEFSFRRGLKKKSTRSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLVLVIVSGRRPLHVLASPMKLEKANLISWCRNLAQAGNILELVDEILKEDYSKDQASLCINLALTCLQKIPELRPDIRDIVKILKGEMALPPLPFEFSPSPPSKLYSRSRRKQKGNAE* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5265 693 Pfam Protein kinase domain 81 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5265 693 SUPERFAMILY Protein kinase-like (PK-like) 60 679 IPR011009 -
Lja3g5265 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lja3g5265 693 MobiDBLite consensus disorder prediction 670 693 - -
Lja3g5265 693 MobiDBLite consensus disorder prediction 401 430 - -
Lja3g5265 693 PANTHER OS07G0586332 PROTEIN 1 692 IPR044576 -
Lja3g5265 693 Coils Coil 455 475 - -
Lja3g5265 693 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Lja3g5265 693 PANTHER OS08G0275200 PROTEIN 1 692 - -
Lja3g5265 693 SMART serkin_6 79 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5265 693 ProSiteProfiles Protein kinase domain profile. 79 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5265 693 MobiDBLite consensus disorder prediction 401 419 - -
Lja3g5265 693 Gene3D Phosphorylase Kinase; domain 1 47 154 - -
Lja3g5265 693 Gene3D Transferase(Phosphotransferase) domain 1 155 263 - -
Lja3g5265 693 Gene3D Transferase(Phosphotransferase) domain 1 513 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5265 Lja-Chr3 94905172 94907751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5265 527 659 Receptor kinase-like Gene Family AT3G58690 32.090 1.45e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Lja3g5265 Pkinase 7.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5265 - - ccaj:109812677 1071.23