Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5261 ATGGACGACTTCTTCGCTCTAATTTGCCCTAATTCTCCATTCGTATGGGATGGAAAGAGATTCTCCGAGTGCTTTGAAGACATTGTTTTAGGTTTAGCAGTGAACATAGTGACTATTGTTATGATTGTTCTGCTTGGAATTTATCAAAAGATTGCCCGAGGAGTTCGGAGACCAGAAGCTCAGATGGCCCTTCCAGAGAAAGTTGTCCTGGATTTCATACCAGCTGTTGGAGCATGTTTTTCAATCTCGAACATAATTTTCTTGTGGAAGAAAGAACATGATGGTCATTTTGTGGAATATCATAAATGGTTTTATAGTTGTTCTGAATTGGTTGTGTGGATAAGTATCGTTCTCTTCACAAGGTGTGTCAGCAGTCATTACATTGTCTTGAACTGTGCCTTATGTTTATGGTGGATTCTAAAACCAATATTGGGGGTTTTCCATTTGATGACAAAGTTTCCATCATTGGAGGTTTCAGTATTAATCATAGAAAGCATACTTGTTCTCTCCAATATCTCATTTGGAATTGCTATCAATGTGATGAGGATAAAGAGACTATCTACAAAAAGCAGTTTATTGGAAGAGCCACTTCTTTCCAATGGTGTGGACCTTGAGGAAGGTGGCAATCGTGACCTTGGATTTAACGGAGACCTTTGGGATTTGATGACTTTCAAATTCATAACTCCAGTAATGAATTGTGGTGTTGTAAAGCAATTAGACTTTGAAGATCTTCTGCCACTACCTACTGATATGGGTCCTTCTCCCTGTCATGAGATAATTTTATCCTGTTGGCGAGCTCAGCTGAGTAATAACAGTTCAAGCCCATCCTTGCTTAGAGCACTCTGCAGTGCATATGGTTGGCCATATCTCCGTCTGGGTTTGTTGAAGGTGATTAATGATTGTATTGGTTTTGCGGGACCATTGCTTCTCAATAAGCTGATCCAGTTTCTTCAACAAGGTTCAGTGAATTGGGATGGCTATTTACTTGCATTATCCTTGGGTCTCACCTCTATAATTAAATCTGTTTTAGATACACAATATACTTTTCATCTTTCCAAACTGAAGTTAAAGCTGCGATCTAGTATCATGACTCTTATCTATGAGAAGTGTCTACGTGTGAACCTAGCAGAGCGTTCAAAATTCACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTCAACTTGTGTAATAGTTTCCATGATATGTGGAGCCTGCCTTTACAAATTGGAGTGGCACTTTATCTTTTATATACTCAAGTCAAATTCGCATTTGTATCTGGATTAGCGATAACCATTCTGTTAATACCAGTGAATAAATGGATATCAAAATTGATTGCAAGAGCCACTGAGCAAATGATGAAGCAGAAGGATGAAAGGATTCGTAAGACTGGAGAACTTTTGACATATATTCGTACTTTGAAGATGTATGGATGGGAACTTCTTTTCTCGAGTTGGTTGATGGAAACAAGAACTTTGGAAGTGAAACACTTGGCTACTCGGAAGTATTTGGATGCATGGTGTGTATTCTTTTGGGCAACAACACCGACACTCTTTTCTCTTTTCACATTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCAGCAATGGTTTTCACTTGTCTTGCTTTGTTCAACACATTGATTTCACCACTGAACTCATTTCCTTGGGTGATTAATGGATTGATTGATGCCATCATATCCTCCAGACGGCTAAGTAGGTTTCTCTCTTGTCCTGAACATAAATTTAAAGTGGGAGAGATCAGTTCCTGTTCATCATCATTCCTGAGTAAACAGCCTGATTCTTTACAAAGTTTGGCTGTCTTTATCGAAGATGCGTGTTGTACTTGGTCAAGCAGTGATGAACAAGCATTAAACTTGGTGCTGAATCATGTGACTCTAGGCCTGTCCAAGGGTTCCTTTATTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATTCTTGGAGAAATGCGGGTTGCTCATGGATCTACTCATTGCAATGGTTCGGTAGCTTATGCACCACAGCTTCCTTGGATTTTGTCTGGAACTGTGCGTGACAATATATTGTTTGGGAAAGGCTATGATCCTAAAAGGTATGCAGATACACTGCAAGCATGTGCGTTAGATGTGGATATCTCATTGATGGTTGGAGGTGACATGGCTTATATTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGTACTGTATCATGACTCAGATGTCATTATGCTTGACGATGTCCTGAGTGCAGTTGATGTTCAAGTTGCTCAATGGATCTTACACAATGCAATTCTAGGTCCTCTTATGCAGGGGAAAACTCGACTTCTTTGTACCCACAACATTCAGGCAATATCTTCTGCTGATATGATTGTTGTATTGGACAAAGGACACGTAAAGTGGATGGGAAGATCAGCTGACTATTCAGTTTCTTCATATACAGCATTCTCACCACTGAATGAAATTGATTCAACTTTACATGATCATAGACAATCTTGCAGCACAGATTCTTCTTCCAAATCTATGGAGCAGTATCTTCCTGATAGAGTTATTGTGGATGCTCTGGAGGGAGCCGAGGAGGTAATTGAAGTTGAGTTGAGGAAAGAAGGAAAAGTTGAAATTGGGGTGTACAAGAATTATGCTGTCTTTACTGGCTGGTTCATCACAGTTGTTATATGTCTCTCAGCTATTTTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATATTGGGTTGATACAACAACAAAAAGCGGTCAAACGAAATACTCCGTGTCTTTCTATCTGGTTATACTATGTCTCTTTTGTATTTTGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCGTTTGGTGGCTTACAAGCAGCAACTAAGGTACACAATAGACTGCTTAGCAAGCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCAGGTGGAAGAATACTGAATAGGTTATCATCAGATCTCTATACAATTGATGATTCTCTTCCATTCATTATGAACATTCTCCTAGCTAATTTCGTGGGCCTGTTGGGTATTGCAATAGTTCTGTCTTATGTACAGGTCTTCTTCTTAGTCTTGTTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTATTCTACAGATCAACATCAAGAGAATTACGACGACTGGATAGTGTTTCTCGTTCTCCAATATATACATCTTTCACCGAAACACTTGATGGATCATCAACAATTAGGGCGTTTAAATCTGAGGACTTTTTCTTTGCAAAATTCATTCAACATGTAACATCGTATCAGAAGACTTCCTATACAGAGATAGTGGCGAGTTTGTGGCTTTCATTGCGTCTTCAGTGGTTAGCTGCATTTGTCATCTCATTCATAGCCCTTATGGCTGTTGCCGGATCACTGGGCAGTTTGCCTATCAACTTTGGCACACCAGGACTGGTAGGTTTGGCCCTCTCATATGCAGCTCCAATCGTGTCCCTCTTGGGGAGTTTCCTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGCCCTTCAATACATGGACATTCCTCAAGAAGAACAAGCTGGATGCCTAAACTTGAATCCAGATTGGCCAAATCAAGGAGTTATTAAATTCCAGCATGTTACTTTGAAATATATGCCCTCTTTGCCTGCCGCACTCTGCAATCTTAGTTTTAGAATTGCAGGAGGGACACAGGTTGGAATAATTGGAAGAACAGGCGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGCCTTACCCCAATATGTACAGGCTCCATCACAGTTGATGGCATGGACATTCAAAATATTCCTGTCAGAGAACTACGAACACATTTGGCTATTGTCCCTCAGAGCCCATTCTTGTTTGAAGGATCACTAAGGGACAACCTTGATCCATTCAAAATGAATGATGACTTAAAAATTTGGAATGCATTGGAGAAATGCCATGTGAAAGAGGAAGTAGAAGCAACCGGAGGGTTGGATATTCTTGTAAAGGAAGGCGGTATATCATTTTCAGTTGGCCAGCGACAGCTTCTTTGCCTTGCGCGCGCAATTCTCAAATCTTCAAAGGTTCTTTGTTTGGATGAATGCACGGCCAATGTAGACACTCAAACTGCTTCACTGCTTCAAAGTACCATATCCAGTGAATGCCAAGGAATGACAGTGATCACAATTGCTCATCGGATTTCAACTGTTATAAATATGGATAACATTCTGATCCTTGACCATGGGAACCTGGCTGAACAAGGAAACCCTCAGGTTCTTTTGAAAGATGACACCTCTATATTTTCTAGTTTTGTTAAAGCTTCATCAATGTAA 4407 0.4014 MDDFFALICPNSPFVWDGKRFSECFEDIVLGLAVNIVTIVMIVLLGIYQKIARGVRRPEAQMALPEKVVLDFIPAVGACFSISNIIFLWKKEHDGHFVEYHKWFYSCSELVVWISIVLFTRCVSSHYIVLNCALCLWWILKPILGVFHLMTKFPSLEVSVLIIESILVLSNISFGIAINVMRIKRLSTKSSLLEEPLLSNGVDLEEGGNRDLGFNGDLWDLMTFKFITPVMNCGVVKQLDFEDLLPLPTDMGPSPCHEIILSCWRAQLSNNSSSPSLLRALCSAYGWPYLRLGLLKVINDCIGFAGPLLLNKLIQFLQQGSVNWDGYLLALSLGLTSIIKSVLDTQYTFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISKLIARATEQMMKQKDERIRKTGELLTYIRTLKMYGWELLFSSWLMETRTLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHKFKVGEISSCSSSFLSKQPDSLQSLAVFIEDACCTWSSSDEQALNLVLNHVTLGLSKGSFIAVIGEVGSGKSSLLYSILGEMRVAHGSTHCNGSVAYAPQLPWILSGTVRDNILFGKGYDPKRYADTLQACALDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARVLYHDSDVIMLDDVLSAVDVQVAQWILHNAILGPLMQGKTRLLCTHNIQAISSADMIVVLDKGHVKWMGRSADYSVSSYTAFSPLNEIDSTLHDHRQSCSTDSSSKSMEQYLPDRVIVDALEGAEEVIEVELRKEGKVEIGVYKNYAVFTGWFITVVICLSAILMQASRNGNDLWLSYWVDTTTKSGQTKYSVSFYLVILCLFCILNSFFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIVLSYVQVFFLVLLLPFWYIYSRLQLFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFAKFIQHVTSYQKTSYTEIVASLWLSLRLQWLAAFVISFIALMAVAGSLGSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEEQAGCLNLNPDWPNQGVIKFQHVTLKYMPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSITVDGMDIQNIPVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKIWNALEKCHVKEEVEATGGLDILVKEGGISFSVGQRQLLCLARAILKSSKVLCLDECTANVDTQTASLLQSTISSECQGMTVITIAHRISTVINMDNILILDHGNLAEQGNPQVLLKDDTSIFSSFVKASSM* 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5261 1468 CDD ABCC_MRP_domain1 615 816 - -
Lja3g5261 1468 Gene3D - 1216 1466 IPR027417 -
Lja3g5261 1468 Gene3D ABC transporter type 1, transmembrane domain 265 587 IPR036640 GO:0005524|GO:0016021
Lja3g5261 1468 Gene3D ABC transporter type 1, transmembrane domain 876 1215 IPR036640 GO:0005524|GO:0016021
Lja3g5261 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 909 1196 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g5261 1468 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 191 1448 - -
Lja3g5261 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1231 1464 IPR003439 GO:0005524
Lja3g5261 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 824 IPR027417 -
Lja3g5261 1468 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524
Lja3g5261 1468 SUPERFAMILY ABC transporter transmembrane region 278 577 IPR036640 GO:0005524|GO:0016021
Lja3g5261 1468 Pfam ABC transporter transmembrane region 293 557 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g5261 1468 Pfam ABC transporter transmembrane region 910 1156 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g5261 1468 ProSitePatterns ABC transporters family signature. 1367 1381 IPR017871 GO:0005524
Lja3g5261 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 294 569 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g5261 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1456 IPR027417 -
Lja3g5261 1468 SUPERFAMILY ABC transporter transmembrane region 905 1213 IPR036640 GO:0005524|GO:0016021
Lja3g5261 1468 CDD ABC_6TM_MRP7_D2_like 908 1208 - -
Lja3g5261 1468 CDD ABCC_MRP_domain2 1229 1448 - -
Lja3g5261 1468 Pfam ABC transporter 634 766 IPR003439 GO:0005524
Lja3g5261 1468 Gene3D - 600 858 IPR027417 -
Lja3g5261 1468 Pfam ABC transporter 1249 1395 IPR003439 GO:0005524
Lja3g5261 1468 PANTHER MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7 191 1448 - -
Lja3g5261 1468 SMART AAA_5 643 817 IPR003593 -
Lja3g5261 1468 SMART AAA_5 1257 1441 IPR003593 -
Lja3g5261 1468 CDD ABC_6TM_MRP7_D1_like 292 577 - -
Lja3g5261 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 613 840 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5261 Lja-Chr3 94830871 94846860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5261 633 859 Calmodulin-binding Proteins AT2G36910 27.016 3.08e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5261 K05674 - gmx:100814181 2532.29