Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5257 ATGGATTGTTCATCATGGATTAACACCTCATTGGATCTCAACATTAATTCCCACAGGGTTTATGAAGATGTTCTTCAAAAAAAGGAGGTGGAAAACAACTTTTTCTCACTAGGATTAAGGAAGTCTTCGGTGAAAGAAGAGTCCAATGGTGCCTTGGTGGAGGAGCTGAAGAGGGTGAGTGCAGAAAACAAGAAGTTAACTGAAATGCTCACAGAGATGTGTGAGAACTACAACACTTTGCGAAGTAACTTGACGGAATATATGAGGAATAATCCTGACAACAAGGAAGTGATCAGCACATCAAAGAAAAGGAAGTCTGAAAGCAGTAACAACAACAGCAATCCATTGGGAGTAAATGGGAACTCTGAGAGCAGCTCAACTGATGAAGAAACATGCAAGAAACCAAGGGAAGAGACCATCAAGGCAAAAGTTTCCAAGGTTTATCACAGGACCGAACCATCAGACATAAGCCTTATTGTGAAAGATGGATATCAGTGGAGAAAATATGGACAAAAAGTGACCAGGGATAACCCTTCACCAAGAGCATACTTCAAATGCTCTTTTGCTCCTACCTGTCCAGTCAAAAAGAAGGTACAAAGAAGTGTAGATGATCCATCCATTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCAATCTCTTCACAGATGGAGGCAACATCAGGCTCAAATCGTTGTATGACCACAGTTTCAGTACCCTGTTCAGCACCAACAGTTACCCTTGACTGGACAAAATCTAAGTCCAGCTGCAAAGAGTCCAAGAATATGAATCCCAAAATCCATTCACCCGAAGTCCCTCAGATTTTGGTAGAACATATGGCTTCTTCCTTGACCAATGATCCTAATTTCAGAGCAGCACTTGTTGCTGCTATCTCAGGACAAATGCTGCCAAAAAACTAA 921 0.4159 MDCSSWINTSLDLNINSHRVYEDVLQKKEVENNFFSLGLRKSSVKEESNGALVEELKRVSAENKKLTEMLTEMCENYNTLRSNLTEYMRNNPDNKEVISTSKKRKSESSNNNSNPLGVNGNSESSSTDEETCKKPREETIKAKVSKVYHRTEPSDISLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSVDDPSILVATYEGEHNHPISSQMEATSGSNRCMTTVSVPCSAPTVTLDWTKSKSSCKESKNMNPKIHSPEVPQILVEHMASSLTNDPNFRAALVAAISGQMLPKN* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5257 306 PANTHER TRANSCRIPTION FACTOR 1 306 - -
Lja3g5257 306 MobiDBLite consensus disorder prediction 104 126 - -
Lja3g5257 306 SUPERFAMILY WRKY DNA-binding domain 159 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g5257 306 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 306 IPR044810 GO:0003700
Lja3g5257 306 MobiDBLite consensus disorder prediction 85 137 - -
Lja3g5257 306 Pfam WRKY DNA -binding domain 161 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g5257 306 ProSiteProfiles WRKY domain profile. 159 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g5257 306 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g5257 306 Coils Coil 49 76 - -
Lja3g5257 306 Gene3D WRKY domain 144 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5257 Lja-Chr3 94808313 94810443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5257 4 306 WRKY Transcription Factor Family AT1G80840 51.402 6.80e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja3g5257 WRKY 9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5257 - - gmx:100798375 440.269