Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5256 ATGGATCAACGACAACAATCAAGGACGATGAGAGCGGCCAAGAGGAACATATTGTTCAACAAGTACGAGATTGGCAAGATCCTAGGCCAAGGAAACTTCGCCAAGGTCTACCATGGAAGAAACATGGAGACAAACGAGAGCGTTGCCATCAAGGTCATCAAGAAGGAAAGGCTGAAGAAGGAGAGACTAGTCAAGCAAATCAAGCGTGAAGTTTCCGTGATGCGCCTCGTTCGCCACCCCCACATCGTGGAGCTGAAGGAAGTCATGGCCACCAAGACCAAGATCTTCATGGTGGTTGAATACGTCAAGGGAGGTGAGCTCTTCGCGAAGCTCACCAAAGGGAAGATGACGGAGGTCGCCGCTAGAAAATACTTCCAGCAGCTAATAAGCGCAGTCGATTTCTGCCATAGTCGCGGCGTCACGCACCGCGACTTGAAGCCGGAGAATCTTCTCCTCGACGACAACGAGGATCTGAAGGTCTCCGACTTCGGGTTATCGTCGCTGCCCGAGCAGCGACGATCCGACGGGATGCTCCTCACCCCATGCGGAACTCCGGCGTACGTCGCGCCGGAGGTCCTCAAGAAGAAAGGCTACGACGGATCCAAAGCTGATATATGGTCTTGTGGGGTGATCCTCTACGCTCTGCTTTGCGGGTATCTTCCATTTCAGGGTGAGAATGTGATGAGGATTTACAGCAAATCGTTCAAAGCTGATTATGCGATTCCGGAATGGATCTCACCGGAGGCGAAGAATTTGATCTCGAAACTGCTGGTGGTTGATCCGGAGAAGAGGTATTCCATTGATGAGATAATGAGGGATCCTTGGTTTGAGATCGGGTTCATGAGACCGCTTGCTTTTTCGATGAAAGCGAGCGCGGTGGATGATACTGTGATTGATTTCAACGACGATGTGGTTGAAGATCTTGATCCGAAGAGTGATGTTGGTGGTGGTGAGTTTGTGGAGGCGGCGCGTCCGTCGTACAACGCGTTTGAGATAATCTCGTCGCTGTCGCACGGGTTTGATCTGAGGAATTTGTTTGAGACGAGGAAGAGGTCGCCGTCGACGTTTATCTCGAAACTGTCGGCGTCGGCGGTGGTGGCGAAGCTTGAGGCGGTGGCGAAGAAGCTGAATTTGAGGATCACGGGGAAGAAGGAGTTTATGGTGCGGATGCAGGGGGTGACGGAGGGGAGGAAGGGGAAGGTGGGGATGACGGTGGAGGTATTTGAGGTGGCGCCGGAGGTGGCGGTGGTGGAGTTTTCGAAGAATGCCGGAGACACGCTGGAGTATATAAAGCTGTGTGAGGATCAAGTAAGGCCTTCGTTAAACGACATCGTTTGGTCATGGCAGGGACAGGGTAGTTCGTAG 1365 0.526 MDQRQQSRTMRAAKRNILFNKYEIGKILGQGNFAKVYHGRNMETNESVAIKVIKKERLKKERLVKQIKREVSVMRLVRHPHIVELKEVMATKTKIFMVVEYVKGGELFAKLTKGKMTEVAARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDDNEDLKVSDFGLSSLPEQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLCGYLPFQGENVMRIYSKSFKADYAIPEWISPEAKNLISKLLVVDPEKRYSIDEIMRDPWFEIGFMRPLAFSMKASAVDDTVIDFNDDVVEDLDPKSDVGGGEFVEAARPSYNAFEIISSLSHGFDLRNLFETRKRSPSTFISKLSASAVVAKLEAVAKKLNLRITGKKEFMVRMQGVTEGRKGKVGMTVEVFEVAPEVAVVEFSKNAGDTLEYIKLCEDQVRPSLNDIVWSWQGQGSS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5256 454 Pfam NAF domain 326 381 IPR004041 GO:0007165
Lja3g5256 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Lja3g5256 454 Pfam Protein kinase domain 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5256 454 SUPERFAMILY Protein kinase-like (PK-like) 18 277 IPR011009 -
Lja3g5256 454 ProSitePatterns Protein kinases ATP-binding region signature. 28 55 IPR017441 GO:0005524
Lja3g5256 454 SMART serkin_6 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5256 454 Gene3D Kinase associated domain 1, KA1 323 447 - -
Lja3g5256 454 PANTHER CBL-INTERACTING PROTEIN KINASE 16 13 451 - -
Lja3g5256 454 ProSiteProfiles Protein kinase domain profile. 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5256 454 CDD CIPK_C 328 442 - -
Lja3g5256 454 PANTHER - 13 451 - -
Lja3g5256 454 ProSiteProfiles NAF domain profile. 322 347 IPR018451 GO:0007165
Lja3g5256 454 Gene3D Transferase(Phosphotransferase) domain 1 12 313 - -
Lja3g5256 454 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5256 Lja-Chr3 94781638 94783659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5256 14 454 CBL-interacting serine-threonine protein kinases AT5G10930 60.271 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja3g5256 Pkinase 2.1e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5256 - - gmx:100804244 693.345