Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5255 ATGAAAGATTTGTTTTGGCTGCAGGAAGGAAAAAAAGAGAACATGGCTGTCACAGGTTCTGCTAATGGGCAGCCACAATTCATTTCCAGCTCTGGAAACCGAAGCCTTTCCAATGCGCCACTCATTGAGAACTCAGATACTCATCAAATTGTTGTGCCTGATAGGAGAAGCTGGAAAAATTTATTTGCATACATGGGCCCTGGGTTTCTTGTTTCCATTGCATATATAGACCCAGGAAACTTTGAGACTGATCTTCAGGCTGGGGCACAATATAAATATGAGTTACTTTGGATCATACTGGTCGCGTCATGTGCTGCTCTTGTTATTCAAACAATGGCAGCCAATCTCGGGGTGGTCACAGGAAAGCACTTGGCAGAGCATTGTAGAACTGAATATGCTCGGGTGCCCAACTTTATCCTTTGGGTTATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTCATTGGGACCGCCTTCGCACTGAATATGCTCTTTAACATACCTGTTTGGATTGGTGTTCTTCTGACTGGACTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTAGTATTTACAATTGCTGGATGTTTCATGGCTGAGCTTGGATATGCAAAGCCGGATGCTAAAGAAGTTGTGAGGGGTCTTTTTGTGCCCCAACTAAAAGGGAATGGTGCTACTGGTCTTGCAATTTCACTCCTCGGGGCTATGGTTATGCCGCACAATCTCTTCCTGCATTCAGCACTGGTGCTTTCTCGGAAAATACCACGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTATGGTGGCCTTCCTCATAAATGTTTGTGTTATTTCTGTAAGCGGTGCCATTTGTAATTCTCCGAATTTGAATCGAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTATAACAGGGACATATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTACGTCTGAAACCTTGGCTTCGGAACATGTTAACTCGTAGCTTAGCCATTGTTCCTAGTTTGGTTGTTGCACTCATTGGTGGCTCTTCAGGGGCTGGGGAGCTCATCATAATTGCATCGATGATCTTATCATTTGAACTTCCGTTTGCTTTGGTTCCACTCCTCAAGTTTACAAGTAGCAAAACTAAGATGGGGGCACATGTTAACTCAACTGCGCTTTCCGCGGTTACTTGGATAATTGGCTCCCTCATTATGGCCATTAATATATACTATTTAATTACTGGCTTCATCAAGCTGCTTCTTCATAGTCACATGAAAATTGTGGCTAAGGTATTTCTTGGGATGTTAGGATTTTCAGGTATTGCAGTATATTTGGCTGGTATAGCATATCTTGTACTTCGCAAAAACAAAGAGTCCACACACCTTCTGGCTCTAACAGCACCAGAAAGTCAGCAAATGACAAATGAACAAGGCAATGGATCAATCTATTCTCTTCCAAGAGAAGACATAGTGAGCATGCAGTTGCCTCAAAGAAGTGGTCCTGCAGATCTTGACTGA 1677 0.4281 MKDLFWLQEGKKENMAVTGSANGQPQFISSSGNRSLSNAPLIENSDTHQIVVPDRRSWKNLFAYMGPGFLVSIAYIDPGNFETDLQAGAQYKYELLWIILVASCAALVIQTMAANLGVVTGKHLAEHCRTEYARVPNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAGCFMAELGYAKPDAKEVVRGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALMVAFLINVCVISVSGAICNSPNLNREDQMSCQDLDLNKASFLLRNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNMLTRSLAIVPSLVVALIGGSSGAGELIIIASMILSFELPFALVPLLKFTSSKTKMGAHVNSTALSAVTWIIGSLIMAINIYYLITGFIKLLLHSHMKIVAKVFLGMLGFSGIAVYLAGIAYLVLRKNKESTHLLALTAPESQQMTNEQGNGSIYSLPREDIVSMQLPQRSGPADLD* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5255 558 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 24 558 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g5255 558 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 60 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g5255 558 Hamap Divalent metal cation transporter MntH [mntH]. 53 469 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g5255 558 Pfam Natural resistance-associated macrophage protein 81 443 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g5255 558 PANTHER METAL TRANSPORTER NRAMP1 24 558 - -
Lja3g5255 558 PRINTS Natural resistance-associated macrophage protein signature 193 214 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g5255 558 PRINTS Natural resistance-associated macrophage protein signature 168 187 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g5255 558 PRINTS Natural resistance-associated macrophage protein signature 413 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g5255 558 PRINTS Natural resistance-associated macrophage protein signature 140 166 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g5255 558 PRINTS Natural resistance-associated macrophage protein signature 381 398 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g5255 558 PRINTS Natural resistance-associated macrophage protein signature 243 266 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g5255 558 PRINTS Natural resistance-associated macrophage protein signature 353 372 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5255 Lja-Chr3 94758422 94765074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5255 29 551 Inorganic Solute Cotransporters AT1G15960 80.762 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5255 K21398 - gmx:100797298 970.304