Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5254 ATGCCAGCTGCTGCCGGCGAAACCATCTGTGTCACCGGCGCCGGCGGCTTCATCGCCTCATGGATGGTCAAACTCCTCTTGCAGAAAGGCTACACTGTGCGAGGAACTGTCCGAAACCCCGATGATCCCAAAAATGGTCACCTGAGAGAGTTGGAAGGAGCATCTGACAGGCTTACTCTGATCAAGGTTGACCTCCTTGAACTCAACTCTGTCAGAGCTGCTGTTCACGGCTCTCATGGCGTCTTTCACACTGCCTCTCCCGTCACTGATAACCCCGAAGAGATGGTGGAGCCGGCGGTGAATGGAGCCAAGAATGTGATCATAGCAGCTGCAGAAGCTAAGGTGCGGCGCGTGGTTTTCACCTCCTCAATTGGCGCCGTCTACATGGACCCTAAAAGGAGTGTAGATTCAGTGGTTGATGAGTCTTGTTGGAGTGATTTAGAGTTTTGCAAAGACACCAAGAATTGGTATTGCTATGGGAAGGCTGTGGCTGAGCAAGCAGCATGGGACACAGCAAAAGAGAAAGGGGTGGACTTGGTTGTGGTGAACCCGGTTCTGGTTCTTGGACCATTACTCCAACCAACCATCAATGCGAGCACGGTTCACATACTCAAGTACCTAACCGGTTCGGCTAAGACCTATGCAAATGCCACACAGGCTTATGCGGATGTTAGGGATGTGGCGTTGGCACACATACTTGTTTATGAGAGGCCAGAAGCTTCTGGTCGATACATATGTTCTGAGTCTTCACTGCACCGTGGAGAGCTTGTTGAGATTTTGGCCAAGCATTTCCCTGAGTACCCAATGCCTACCAAGTGTAAAGATGAAAAGAATCCAAGAGCAAAACCGTACATATTTTCAAATCAAAAGCTGAAAGATTTGGGATTGGAATTCACTCCAGTGAGTCACAGTTTATATGAGACCGTTAAGAGTCTGCAAGAGAAAGGTCACCTTACGATTCCTAAGCAAGAAGATTCTATTGCAGTGAAATCCTAA 996 0.488 MPAAAGETICVTGAGGFIASWMVKLLLQKGYTVRGTVRNPDDPKNGHLRELEGASDRLTLIKVDLLELNSVRAAVHGSHGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPKRSVDSVVDESCWSDLEFCKDTKNWYCYGKAVAEQAAWDTAKEKGVDLVVVNPVLVLGPLLQPTINASTVHILKYLTGSAKTYANATQAYADVRDVALAHILVYERPEASGRYICSESSLHRGELVEILAKHFPEYPMPTKCKDEKNPRAKPYIFSNQKLKDLGLEFTPVSHSLYETVKSLQEKGHLTIPKQEDSIAVKS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5254 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 313 IPR036291 -
Lja3g5254 331 Pfam NAD dependent epimerase/dehydratase family 9 241 IPR001509 -
Lja3g5254 331 Gene3D - 1 331 - -
Lja3g5254 331 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 322 - -
Lja3g5254 331 CDD FR_SDR_e 10 296 - -
Lja3g5254 331 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 4 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5254 Lja-Chr3 94752591 94757556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5254 6 272 Monolignol Biosynthesis Gene Families AT1G80820 74.532 3.49e-142 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5254 K09753 - gmx:100789070 574.704