Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5252 ATGGACAACAATGAGGACATTCCGTCCATACCTTCAACACCCGCAACCACGCCAGGACATACCCCTGGTCGACCCCTTTTTGGTGGGTTGGGGTCTGATAATAGAACAGGGAATAATGGTTATGGTAAGAAGAAGAAGTCCCTCCTTAAGAATTGTAATTGTTTCACTGTTGAAGAATGGACCATAGAAGATGGAGCCTTGCCCGCCGTTTCTTGTTCATTGCCATCCCCTCCTGTCTCCCTAGCAAGAAAGGTAGGAGCTGAGTTTATAGGGACTTTCATTCTGATGTTTGCTGGGACAGCCACTGCTATTGTGAACCAAAAGACACAAGGTGCTGAAACTTTGATTGGATGTGCTGCCTCAACTGGTCTAGCTGTTATGGTTGTCATCCTCTCCACCGGTCACATCTCCGGTGCTCATCTCAACCCTGCTGTCACCATTGCTTTTGCTGCATTGAAGCACTTCCCATGGAAGCATGTGCCTATGTATATTATTGCACAAGTTATGGCAGGAATTTGTGCTTCATTTGGTCTGAAAGGGGTATTCAACCCTTTCATGAGTGGTGGAGTCACGGTTCCTTCTGGAGGATATGGTCAAGCTTTTGCTTTAGAGTTCATTATCAGCTTTATTCTCATGTTCGTTGTCACTGCAGTCGCTACCGACACAAGGGCTGTTGGAGAGATGGCCGGAATTGCGGTGGGAGCGACTGTCATGCTCAATATACTCATAGCAGGGCCAGAAACCGGAGCCTCCATGAACCCAGTAAGAACACTAGGTCCGGCGATTGCCGCAAACAACTACAAAGCCATCTGGGTCTATCTGGTAGCTCCCGTACTTGGAGCTCTGAGTGGGGCCGGTATATATACTGCGGTGAAGCTGCCTGATGAAGATGAAGATAGTGCCAAGGTGGTGGGTTCAAACCACCCCAGCTTCAGAAGGTGA 942 0.4851 MDNNEDIPSIPSTPATTPGHTPGRPLFGGLGSDNRTGNNGYGKKKKSLLKNCNCFTVEEWTIEDGALPAVSCSLPSPPVSLARKVGAEFIGTFILMFAGTATAIVNQKTQGAETLIGCAASTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPMYIIAQVMAGICASFGLKGVFNPFMSGGVTVPSGGYGQAFALEFIISFILMFVVTAVATDTRAVGEMAGIAVGATVMLNILIAGPETGASMNPVRTLGPAIAANNYKAIWVYLVAPVLGALSGAGIYTAVKLPDEDEDSAKVVGSNHPSFRR* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5252 313 MobiDBLite consensus disorder prediction 1 19 - -
Lja3g5252 313 Gene3D Glycerol uptake facilitator protein. 74 301 IPR023271 -
Lja3g5252 313 PRINTS Major intrinsic protein family signature 83 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5252 313 PRINTS Major intrinsic protein family signature 122 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5252 313 PRINTS Major intrinsic protein family signature 159 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5252 313 PRINTS Major intrinsic protein family signature 203 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5252 313 PRINTS Major intrinsic protein family signature 234 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5252 313 PRINTS Major intrinsic protein family signature 271 291 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5252 313 TIGRFAM MIP: MIP family channel proteins 87 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5252 313 ProSitePatterns MIP family signature. 140 148 IPR022357 -
Lja3g5252 313 CDD MIP 83 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5252 313 SUPERFAMILY Aquaporin-like 80 297 IPR023271 -
Lja3g5252 313 MobiDBLite consensus disorder prediction 1 39 - -
Lja3g5252 313 Pfam Major intrinsic protein 79 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5252 313 PANTHER BNAA02G36290D PROTEIN 4 300 - -
Lja3g5252 313 PANTHER AQUAPORIN NIP2-1 4 300 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5252 Lja-Chr3 94731407 94735779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5252 3 313 Major Intrinsic Protein MIP AT1G80760 76.282 3.37e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5252 K09874 - gmx:100815637 452.981