Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5249 ATGGACCTTCTAAGGTCAGAACCATGTCCATCTGATAACTTGAACATCTCATTCTCAGACTCAATATCTTCATTCGATATCCAAACAGAGAAAAGACAGAGAGAAAAGGAAGATCAACAACATCCACATGAGTCAGCACCACGCCTTCTACTTGATCTAAGTCTCCCCAGTGAATATTCAGGTGAAAACTCAAAGCCAGAACTCAATCTTATCAATTGCTTTGATACAAATTTGTCCACAAACTCCTCAGAATCTGTTGTTCATGGTAATGAAGTAGAGCCCCGGATTTTCTCATGCAACTATTGCCAAAGACAGTTTTATAGCTCACAGGCTCTTGGAGGACACCAGAATGCACATAAACGTGAAAGAACTCTGGCAAAAAGAGGACACAGAGTTTCTTCAGTAGATTTTGGACAAAGGTACTCCAGCATGGCTTCTCTGCCTTTGCATGGAATTCAGGTGCATTCTATGATTCACAAACCTTCTTACAAAACACCCTTTTTTGGGTGGAAGAAGCAGCGTAAAGAAATTGGAAATTTTGGTGGTGTTGGGGCAGAAGTACCTGAATCATCCTTGGCTGGTGGCACTACAAGGTTAGGAAAGTTTTCTCCAAGGATGGTGCCAGAGGGATTTGGAGGTTACTGGCTGGGTGGTGTTACTGCAACCCATTTGAATACTAAACAAGATGAGTTGCAGAAGCTTGACTTGTCCCTTAAACTCTAA 723 0.4205 MDLLRSEPCPSDNLNISFSDSISSFDIQTEKRQREKEDQQHPHESAPRLLLDLSLPSEYSGENSKPELNLINCFDTNLSTNSSESVVHGNEVEPRIFSCNYCQRQFYSSQALGGHQNAHKRERTLAKRGHRVSSVDFGQRYSSMASLPLHGIQVHSMIHKPSYKTPFFGWKKQRKEIGNFGGVGAEVPESSLAGGTTRLGKFSPRMVPEGFGGYWLGGVTATHLNTKQDELQKLDLSLKL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5249 240 MobiDBLite consensus disorder prediction 27 45 - -
Lja3g5249 240 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 32 240 IPR044246 GO:0009788
Lja3g5249 240 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g5249 240 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Lja3g5249 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Lja3g5249 240 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 32 240 - -
Lja3g5249 240 Gene3D Classic Zinc Finger 76 150 - -
Lja3g5249 240 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
Lja3g5249 240 MobiDBLite consensus disorder prediction 27 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5249 Lja-Chr3 94721737 94722812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5249 51 163 C2H2 Transcription Factor Family AT1G80730 51.111 1.47e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g5249 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5249 - - gmx:100812573 273.863