Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5248 ATGGCTAGACCCCAACAACGCTATCGTGGTGTTCGTCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACAAGAATATGGCTAGGAACATTTGAAACAGCAGAAGATGCAGCAAGAGCCTATGATGAAGCAGCAAGGTTCATGTGTGGGCCAAAAGCAAGAACCAATTTCCCATACAATCCCAATGAGCCACATTCATCTTCAGCTAAGCTTCTCTCTGCAACTTTGACTGCTAAGCTGCACAAGTGTCATATGGCCTCACTTTCCCTTCAAATGGCCAAGCAGAAACCGCCACAAAAAGGGCCTCAAATGCCACTAAGATGCAATGACATGCCTGGAACAAGCACAGGCATTGCTGACTTTAGATGGCCACAGAGGAGGCATGAGGAATTGCAGTGGTTAGAAGGGAATTGGGTAGGGAAAAAAGGCCAATTTGAAGTTCCAGAGCAACAATTTGAGCCAGTTCTTGCAGATGATCACATAGAACAGATGATTCAGGAGTTGCTAGATTATGGCTCCATTGAGCTTAAGCCATGA 555 0.4631 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARFMCGPKARTNFPYNPNEPHSSSAKLLSATLTAKLHKCHMASLSLQMAKQKPPQKGPQMPLRCNDMPGTSTGIADFRWPQRRHEELQWLEGNWVGKKGQFEVPEQQFEPVLADDHIEQMIQELLDYGSIELKP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5248 184 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 183 - -
Lja3g5248 184 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Lja3g5248 184 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Lja3g5248 184 PANTHER ETHYLENE RESPONSE FACTOR 1 183 - -
Lja3g5248 184 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Lja3g5248 184 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Lja3g5248 184 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Lja3g5248 184 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lja3g5248 184 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lja3g5248 184 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5248 Lja-Chr3 94713785 94714707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5248 1 182 AP2-EREBP Transcription Factor Family AT5G25190 62.088 1.22e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja3g5248 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5248 - - gmx:100777851 280.411