Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5244 ATGAATGTTCCTGTTCTGTTCCTACCCATTTGGGTGATGAGTGTTTCTCTTTCCTCTGCAATTCTTCATGCTGCATCCTCCATTTCTGTTTCTCAATCTTCTGCAAATGCACAAGCTGAATCTCCAGGATTTCAGGAGGTTAGAATAGTGCACCACCATAGTTTGAATAAGAGGATTCTAGTAGCACTAATTGCTTGTTCTGCACTTCTTGGAGGAACCTTCCTATTCTTGCTATATGTCTGGCTCCGTCGACATAAATATGTTCGAAGCTCAAATGGTAAAAGCCTAGGAACCATGGAGGTTGCAAAAGCGGAAAGTGTAAGCTCTGTTAATGCTAAACTTAATTACTCAAGGATGGCAGATAAGAAGAGTTCAGTAGCTATTTTCGACTTTCAGCTGTTAGAGGCTGCAACAAACAATTTTAGCACAAACAATGTAATGGGAGAGAGTGGCTCTAGAGTTGTTTATAGAGCTCGTTTTGATGAACATTTCCAGGCAGCAGTGAAAAAAGCAGATAGTGATGCTGATAGAGAATTTGAGAACGAAGTGAGTTGGTTGAGCAAGATACGGCATCAGAATATCATAAAACTTCTGGGCTATTGTATTCATGGTGAATCAAGGTTTCTTGTCTATGAATTGATGGAGAATGGATCTCTGGAAACTCAATTACATGGGCCTAATCATGGATCACCGTTAACTTGGCATCTCCGGTTAAGAATTGCAATTGATGTTGCTCGAGCATTAGAATATCTCCATGAGCACTCCAATCCTCCTGTGGTTCATAGAGACCTAAAATCTTCCAATGTTCTTCTGGATTCTAACTTCAATGCCAAGCTATCAGATTTTGGACTTGCTATAGCTTCTGGAGTGCAACACAAGAACATGAAGATGTCAGGAACTTTGGGATATGTGGCACCTGAGTACATATCACATGGTAAACTAACTGATAAGAGTGATGTCTATGCTTTTGGGGTTCTCCTTCTAGAACTCTTAACAGCAAGAAAACCCATGGAGAACTCGTCCTCACAACAATATCTATCCCTTGTCTCATGGGCCATGCCTCAACTAACTGACAGAGCAAAGCTTCCGAGTATTCTGGATCCTGTTATCAGAGACACAATGGATTTGAAACATTTATATCAGGTTGCTGCAGTGGCTGTACTCTGTGTCCAACCAGAACCAAGTTATAGGCCATTGATAACAGATGTTCTGCATTCTCTCATCCCTTTGGTGCCTGTTGAGCTTGGAGGGTCACTCAGAGTTACAGAACCAATCAGCTCTGAGAATTCTCACTGA 1296 0.4144 MNVPVLFLPIWVMSVSLSSAILHAASSISVSQSSANAQAESPGFQEVRIVHHHSLNKRILVALIACSALLGGTFLFLLYVWLRRHKYVRSSNGKSLGTMEVAKAESVSSVNAKLNYSRMADKKSSVAIFDFQLLEAATNNFSTNNVMGESGSRVVYRARFDEHFQAAVKKADSDADREFENEVSWLSKIRHQNIIKLLGYCIHGESRFLVYELMENGSLETQLHGPNHGSPLTWHLRLRIAIDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNFNAKLSDFGLAIASGVQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVLLLELLTARKPMENSSSQQYLSLVSWAMPQLTDRAKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPISSENSH* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5244 431 Gene3D Transferase(Phosphotransferase) domain 1 214 412 - -
Lja3g5244 431 SMART serkin_6 141 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5244 431 PANTHER RECEPTOR-LIKE KINASE 15 422 - -
Lja3g5244 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Lja3g5244 431 ProSiteProfiles Protein kinase domain profile. 141 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5244 431 Gene3D Phosphorylase Kinase; domain 1 100 213 - -
Lja3g5244 431 SUPERFAMILY Protein kinase-like (PK-like) 118 407 IPR011009 -
Lja3g5244 431 PANTHER OS01G0253100 PROTEIN 15 422 IPR045271 GO:0004714|GO:0006468
Lja3g5244 431 Pfam Protein tyrosine and serine/threonine kinase 154 370 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5244 Lja-Chr3 94686785 94689689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5244 7 353 Receptor kinase-like Gene Family AT1G80640 46.978 1.20e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Lja3g5244 PK_Tyr_Ser-Thr 4.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5244 - - gmx:100811188 721.85