Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5241 ATGGATGGTAAAAAACTCACACAACCCTCCACCTTTCTTCCAAGTATTCCAGAAATCCTTCATCAACCGCCAGAATCTCACTTTGCAGTTTCTGCCACAAACCACCATCACTTCTTGAACAAGTTGTTGTTCTTCTCTCCACCATGTCACGAACAGAGCATTAACGAAACAGGGGATCTCGAAGGAATCGCTGCCATTGTTGGAGAGCATGTTCTCTTCGGAGCCAGAAACGACAACAACAACACAGGAACATGTTCCCTCACACCAAACAAGAAGGAAGATCAGAGAGAAAACAACCATGTTTCAGAGTGTAAGAGATACAGGGGAGTGAGGAAGAGACCCTGGGGGAGGTGGTCGGCGGAGATACGCGACCGGATCGGACGCTGCCGCCACTGGCTCGGCACGTTTGACACAGCGGAGGAAGCGGCGCGTGCGTATGACGCGGCGGCGAGGCGGTTGAGGGGCTCCAAGGCTAGAACCAACTTCGAGATCCCCTCTGTTTTGCCCTCATGTGCTTCTCAAGTGATAACAAAGGTGAATAGTGGCGGTGGTGGTAGCAACAAGAAGCTTAAAGGTAGTGCTAGGAAGTGCTGTGTAGTTACCTCTGTAGCTCAATTGTTCAGTGGTGTTCCTGAAGGTCATGTCAATGGTGGCCAGAAAGGGTTTGGGAATAATGTTGGGCTGGACTTGAAACTTGGTGTAATGTAG 708 0.5014 MDGKKLTQPSTFLPSIPEILHQPPESHFAVSATNHHHFLNKLLFFSPPCHEQSINETGDLEGIAAIVGEHVLFGARNDNNNTGTCSLTPNKKEDQRENNHVSECKRYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPSCASQVITKVNSGGGGSNKKLKGSARKCCVVTSVAQLFSGVPEGHVNGGQKGFGNNVGLDLKLGVM* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5241 235 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Lja3g5241 235 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Lja3g5241 235 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Lja3g5241 235 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Lja3g5241 235 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Lja3g5241 235 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 217 - -
Lja3g5241 235 SUPERFAMILY DNA-binding domain 106 163 IPR016177 GO:0003677
Lja3g5241 235 CDD AP2 105 164 IPR001471 GO:0003700|GO:0006355
Lja3g5241 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 27 217 - -
Lja3g5241 235 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5241 Lja-Chr3 94636468 94637175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5241 33 174 AP2-EREBP Transcription Factor Family AT1G80580 53.103 1.43e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja3g5241 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5241 - - qsu:112004510 187.578