Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5239 ATGGAGTCCCCATGGAAGAACTGTTTACCAAATGTGGAAATGGAAGATGGGGACTCATTCAACATCAACAATGAAGAACATTTATTTCTTGAAGAGATCCTGCAACAGTTTGCTTTGTCCTCTGAGACCGGAAGTCTAGCAAATAACTTACTCAATAGCACCGACGGTGGGTCGAAGGGAGTAGCCATTGATGAGTCCCAACCTGCCCCTGAAACTCATGACGACCAAGCCGGCGGTCGGAGAGAGAGAAGGAAAGGTAAGAGCTCTTCGGGGCATTTGGACCACGCTGTGGCCGAGAGAAAAAGAAGACTGGAACTGACCCAGGGATTCATAGCACTTTCTGCCTTGATTCCGGGCTTGAAGAAGATTGACAAGGTCTCAATTCTTAAGGAAGCAACCACTTATGTGAAACAACTCCAAAATCGAGTAAAAGAGATGGAAGAACAAAGTGCCAAGAAGATAATCGTAGAGTCAATGTCGGTTCTCAATGACGCCGGTTTCCACTATGACCAAGGCATTGTCCCTTACAACATGAACTCTGATAACCGCCACAAACTCAATGATGCAGCACTCCCTGAAGTTGAAGCAAGAGTGATGGAAAAGCAAGTGCTCATCCGAATCCATTGCGACGGAAACCAAGACATTTTGCTCAAAACATTGTCCCACGTTACTAGTCTTGATCTCTCCATTGTAAGCCACACAATGTTACCATTTCGGAAGATTTCTCTTGACGTTACTATTATTGCTCAGATGGGTGACAATTACAAGATAACTTTGAAGGATCTAGTGAGAAGCTTGAGAAAAGTTCTTTTGGAGTCAACTGACATGAAATAG 834 0.4424 MESPWKNCLPNVEMEDGDSFNINNEEHLFLEEILQQFALSSETGSLANNLLNSTDGGSKGVAIDESQPAPETHDDQAGGRRERRKGKSSSGHLDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKKIIVESMSVLNDAGFHYDQGIVPYNMNSDNRHKLNDAALPEVEARVMEKQVLIRIHCDGNQDILLKTLSHVTSLDLSIVSHTMLPFRKISLDVTIIAQMGDNYKITLKDLVRSLRKVLLESTDMK* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5239 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 139 IPR011598 GO:0046983
Lja3g5239 277 Coils Coil 129 156 - -
Lja3g5239 277 MobiDBLite consensus disorder prediction 57 96 - -
Lja3g5239 277 Pfam Helix-loop-helix DNA-binding domain 95 140 IPR011598 GO:0046983
Lja3g5239 277 Gene3D - 80 153 IPR036638 GO:0046983
Lja3g5239 277 MobiDBLite consensus disorder prediction 68 96 - -
Lja3g5239 277 PANTHER BHLH TRANSCRIPTION FACTOR 37 276 - -
Lja3g5239 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 150 IPR036638 GO:0046983
Lja3g5239 277 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 37 276 - -
Lja3g5239 277 SMART finulus 96 145 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5239 Lja-Chr3 94617196 94619700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5239 65 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.321 7.15e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g5239 HLH 9.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5239 - - lja:Lj3g3v0028570.1 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5239 3 94617196 94619700 Lja3g2178 3 25659423 25663351 PCT