Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5238 ATGATGGAGCAGTCATGGGAGAATTTCCCTCTTCATCAGATGGAAATCTTGGGTAGTAGTGATGAGGATGAGGATGAGTTCTTAAGAGATATCCTGCTACCACCAGATTTGTCTCCTGACCATGAATCTCAATCTTTGGTTGTCCAGAAAAAGCTTCAACCGAGAACATTCATTTTGTCTTTCGATAACTCCACGATTTTACCTGCGAGTGCAACCTCAGAACGAGGTACACATTCTAATTCTAAATCTAGTAATAATTCTTCTTTGTCCTCCAGAAGAAAAAGGAACCTGGAAAAAAATCATGTGAGCTTGGAACCAAAATTACCAAGCACCACCACTCAAAGAGGAAAGAAGAATAGAAGCGATTCTCAGACAACGGATCATGTTATGGCGGAGAGAAAACGGAGACAGGATTTGACAGAGAAGTTCATAGCACTTTCAGCTACTATTCCTGGCTTGAAGAAGACGGACAAGACCTCAATAGTTCACGGAGCTATCGATTATGTGAAGCAACTGAAAGAGCGCGTGACAGAGTTAGAACAACAGGGAAATGGGAGAGGCAAAGAATCAATGATAGTTCTGAAGAAAATGAATCTGAGTGCAAATCGTGAAGATACTCCTACCACATCAAGTGAAACAAATAATTCTGAGGATTTGTGTAGACCCAGAGAATTGTTCCCTGATGTTAAAGCAAGGGTGTTGGAGAATGAGGTGCTTATTGTGATCCATTGTGAGAGGGAAAATGGCATTGAGCTCAAAATATTGGACTTACTTGAAAATCTTCGTTTGTGTGTCACCGGAAGCAGTGTCTTGCCGTTTGGGAATTCAACTCTCAGTATTACTATCATTGCTCAGATTGGTGACGCGTGCGAAAACACGACGGTGCCTGATATAGTGGACAACGTCAGACAAGCTCTGTTGAACGACGTCACCACCGATCGTTTTCGTCCTCAACTATCTTATTAA 966 0.4193 MMEQSWENFPLHQMEILGSSDEDEDEFLRDILLPPDLSPDHESQSLVVQKKLQPRTFILSFDNSTILPASATSERGTHSNSKSSNNSSLSSRRKRNLEKNHVSLEPKLPSTTTQRGKKNRSDSQTTDHVMAERKRRQDLTEKFIALSATIPGLKKTDKTSIVHGAIDYVKQLKERVTELEQQGNGRGKESMIVLKKMNLSANREDTPTTSSETNNSEDLCRPRELFPDVKARVLENEVLIVIHCERENGIELKILDLLENLRLCVTGSSVLPFGNSTLSITIIAQIGDACENTTVPDIVDNVRQALLNDVTTDRFRPQLSY* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5238 321 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 310 - -
Lja3g5238 321 MobiDBLite consensus disorder prediction 70 91 - -
Lja3g5238 321 MobiDBLite consensus disorder prediction 105 119 - -
Lja3g5238 321 SMART finulus 129 178 IPR011598 GO:0046983
Lja3g5238 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 186 IPR036638 GO:0046983
Lja3g5238 321 Coils Coil 162 182 - -
Lja3g5238 321 PANTHER BHLH TRANSCRIPTION FACTOR 2 310 - -
Lja3g5238 321 MobiDBLite consensus disorder prediction 120 135 - -
Lja3g5238 321 MobiDBLite consensus disorder prediction 70 135 - -
Lja3g5238 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Lja3g5238 321 Pfam Helix-loop-helix DNA-binding domain 126 173 IPR011598 GO:0046983
Lja3g5238 321 Gene3D - 113 186 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5238 Lja-Chr3 94610220 94615334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5238 33 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.201 6.83e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g5238 HLH 4.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5238 - - gmx:100809888 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2176 3 25621518 25625587 Lja3g5238 3 94610220 94615334 PCT