Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5237 ATGAAGGATTGGTGGGAGAAGTGGTTCTCTGATTTGGATAGGAATGGTGCTAACTCCTTCAATAACATGGAAGCGCAACGAGGAGACATTATCATGAGGCAGCACCCTGAAACCTTATCTTCTTGTAGAACTCAAACACAAACTCACCATCACTCTATGTATTCTTCTAATTGCTTGGATAATTTGGGCTTCAAGGGTCAAAATTCTGGGCCTCATCTTGGAACGAAGAGGATTAGAAGCTCTTCGGAGATACAGGATCACGTAATGGCAGAGAGAAAAAGGAGACAGGAAATGGCAGAGAGGTTTATAGCACTTTCAGCTATGATACCTGGCTTGAAGAAGATAGACAAGGCCTCTGTACTTGGGGAAGCAATTAATTACGTGAAACAACTTCAAGAACGCATAGCAGTGCTTGAAGAAGAGGGTAACAAGAAGAAAAAAAGCACCACCAACTCACTAATATTGATCAAGAAATCTCAATCTTATCCTCATAATTCCGATGATTCCGATCAAGTGCTCCCTGAAGTTGAAGCAATTGGATTAGACTCAGAATCAGAAAAGGAACTACTCATCAGAATCCACTGTGAAAAAAGAAAGGGCATCTTGCTCAAACTACTGGCCCTACTTGAAAACGTACATCTCTCTGTCGCTAGTAGCAACGTGCTCCCATTTGGAAAAAACACTCTCAACATCACCATTATTGCTCAGATGGGTGAGGAATACAAGTTGACAGGGGAAGAATTGGTGAAAGTTTTGAGAGAGGGTCTTTTGAAGTAA 777 0.4157 MKDWWEKWFSDLDRNGANSFNNMEAQRGDIIMRQHPETLSSCRTQTQTHHHSMYSSNCLDNLGFKGQNSGPHLGTKRIRSSSEIQDHVMAERKRRQEMAERFIALSAMIPGLKKIDKASVLGEAINYVKQLQERIAVLEEEGNKKKKSTTNSLILIKKSQSYPHNSDDSDQVLPEVEAIGLDSESEKELLIRIHCEKRKGILLKLLALLENVHLSVASSNVLPFGKNTLNITIIAQMGEEYKLTGEELVKVLREGLLK* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5237 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 131 IPR011598 GO:0046983
Lja3g5237 258 Coils Coil 121 148 - -
Lja3g5237 258 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 6 258 - -
Lja3g5237 258 PANTHER BHLH TRANSCRIPTION FACTOR 6 258 - -
Lja3g5237 258 SMART finulus 88 137 IPR011598 GO:0046983
Lja3g5237 258 Gene3D - 82 154 IPR036638 GO:0046983
Lja3g5237 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 144 IPR036638 GO:0046983
Lja3g5237 258 Pfam Helix-loop-helix DNA-binding domain 86 132 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5237 Lja-Chr3 94592255 94595442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5237 74 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.685 2.18e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g5237 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5237 - - cam:101501845 248.825