Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5236 ATGTGGAACTCTAACACCGCGTCGGAGATTGAACCGTCATCGTCATCATCATCATCGTCGTTCTCCACCACGCTCTTCAATTTCTCTTCTGGAAACCCTAGAATCGAAGAAACTCGCGGCCTCATGCATCTCATCCCCGCCGACGCCACCACCACCACCGCCCCTCCCTCTCTTCCGGTTGATCGGAAACCGCTCGTGTGTGTCGTCGGAGTTCCGAATCACATGACCTATGCGGATTTCTGCCAATTCTGCGGCTCGTTCATTCACCACATTCTCGAGATGCGCATTGTCAGGATGGATGGAATGGAGGATCACTACAGTGTCTTGATCCGTTTTGATGAACAGCAATATGCTGATACTTTCTACACACACTACAATGGTCGTCGTTTCTCATCTCTTGAGGTTGAGGAGTGTCGTGTTCTTTTCACATTGGATGTGCAGTACACTGGCTCAATTGAACATGCTCAACCATCCAGTGCTAGCTCAACTGAACAGCCTACATGTCCTGTATGCCTCGAGCGGTTAGATCAAGACACGAGTGGAATTCTTACAACCATATGCAATCATTCTTTCCATTGTTCTTGCATTTCAAAATGGGCAGATTCCTCTTGTCCTGTATGCCGCTACTGTCAGCAGCAAGCCGAAAAATCTATATGTTTTGTTTGTCAGACCACTGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGGTGTGGAAGATACAAAGGTGGACATGCCATAATACACTGGAAAGAGACACAGCATTGTTATTCCCTCGAAGTGGAAACCAAACGCGTCTGGGATTATGCGGGAGACAACTATGTTCACAGACTTATTCTATCGAAAACTGATGGGAAGCTGGTTGAGCTGAACTCTCACTGTGCGCATGCAGACAGCGGATGTGGAAGTTGCAGCTGTGAAGATAGTGCTGTCAGCGAGGCTATACATAATAGTAAAGTTGAAGCTATTGTCAACGAATATAATGAATTGCTGGCCAGTCAACTTGAAAACCAAAAATTGTATTTTGAATCCTTATTACAAGAAGTAAAAGAAGAAACTGAAAGGAAAATTTCCCAAGGCGTTCAGAAGGCTGTCAGTCTTAAACAGCAGAAGATTCAGGCCAAGATCGACAGATTTAACAAAGAAAAGAAATTTCTGGAGGAGATTAATGAGAATCTTGTGAAAAATGGGGAGATTTGGAAAGCAAAGTTACTTGAGATTGAAGAGAGGGAGAAGAAAACATTAAAACTGAATAATGATAGATTAACAGGCCTGGAAAAGCAGCTTAGTGATCTCATGATTTGTCTCGAGGGAGGGAAGACTGTGCCCGTGTCAAATGAAATTAAAGATGAAACTGTCTTTGACAACTCAAAAGAATCGTCGTCAACTAAAGGCTCTTAG 1404 0.438 MWNSNTASEIEPSSSSSSSSFSTTLFNFSSGNPRIEETRGLMHLIPADATTTTAPPSLPVDRKPLVCVVGVPNHMTYADFCQFCGSFIHHILEMRIVRMDGMEDHYSVLIRFDEQQYADTFYTHYNGRRFSSLEVEECRVLFTLDVQYTGSIEHAQPSSASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYAGDNYVHRLILSKTDGKLVELNSHCAHADSGCGSCSCEDSAVSEAIHNSKVEAIVNEYNELLASQLENQKLYFESLLQEVKEETERKISQGVQKAVSLKQQKIQAKIDRFNKEKKFLEEINENLVKNGEIWKAKLLEIEEREKKTLKLNNDRLTGLEKQLSDLMICLEGGKTVPVSNEIKDETVFDNSKESSSTKGS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5236 467 Coils Coil 370 397 - -
Lja3g5236 467 PANTHER BRCA1-ASSOCIATED PROTEIN 7 463 - -
Lja3g5236 467 Pfam BRCA1-associated protein 2 59 155 IPR011422 -
Lja3g5236 467 CDD RING-H2_BRAP2 166 209 - -
Lja3g5236 467 Coils Coil 406 426 - -
Lja3g5236 467 ProSiteProfiles Zinc finger UBP-type profile. 202 295 IPR001607 GO:0008270
Lja3g5236 467 CDD RRM_BRAP2_like 66 147 - -
Lja3g5236 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 286 IPR013083 -
Lja3g5236 467 Pfam Ring finger domain 167 208 IPR001841 -
Lja3g5236 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 210 IPR013083 -
Lja3g5236 467 SUPERFAMILY RING/U-box 184 283 - -
Lja3g5236 467 Coils Coil 333 353 - -
Lja3g5236 467 SMART Zf_UBP_1 218 267 IPR001607 GO:0008270
Lja3g5236 467 ProSiteProfiles Zinc finger RING-type profile. 168 208 IPR001841 -
Lja3g5236 467 Pfam Zn-finger in ubiquitin-hydrolases and other protein 219 278 IPR001607 GO:0008270
Lja3g5236 467 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g5236 467 SMART ring_2 168 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5236 Lja-Chr3 94587868 94591609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5236 164 208 C3H Transcription Factor Family AT1G72220 48.936 1.90e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5236 K10632 - gmx:100794688 772.311