Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5227 ATGTCTCACAGAAAGGATTCTAATTATTCTTCATTACCCGTTAGCTCCTATCTAGAATTACAGCCTCACAATGATTCCTCTTTTGATGAACCTGGGGAGAGGGATTATTTGGGATCTAAGGTTGTCGATGATGACTACGATGATGATTTCGAAATTGACATTGATAATTACCCTCTTGTTGTTGTTGGCTCTAATCACGGTTCTGGGGTACCCGGGGCTGTGTTCAATTTGACCACCACGGTTATTGGGGCAGGGATCATGGCCCTCCCTGCCACCATGAAAGTTCTAGGAGTGGTTTTGGGGATTGTTTTGATTATTCTCATGGGGATCTTGTCGGAAATTAGTGTCGAATTGTTAGTGCGGTTTTCTGTTTTATGTAAAGCTTCCTCTTATGGGGAGGTTGTTCAGCATGCTATGGGAAAGCCTGTTAGGATTGTGTCTGAAATCTGTATTATAATGAATAATGCTGGTGTTATGGTGGTTTACTTGATCATCATGGGGGATGTCATGTCTGGTTCCCTTCACCATTTGGGGGTGTTTGATCAGTTGTTGGGGAATGGTTTGTGGGATCATAGGAAGATTGTGATTTTGGTTGTCATGGTGGTGTTTCTCGCGCCGCTTTGTTCTCTCGACAAGATTGATTCGTTGAGCTTGACTTCAGCTGCCTCAGTGGCTCTTGCTGTTTTGTTTGTTGTCGTTGCTTTCTTCATTGCTTTCATTAAGCTCGTCGAAGGAAAGATTGACGCTCCGAGGATGTTTCCTGATTTCAGCTCCAAAAAGGCCATCTTGGACTTGCTGGTGGTGATTCCTATCATGACCAATGCATATGTTTGTCATTTTAATGTGCAGCCGATATACAATGAGCTCCAAGGGCGGTCTCCGCAGAAGATGAACCGGGTCGGGAGGATCACCACAGTTTTGTGCATCCTAGTTTATGCTTCAACAGCACTCTCAGGTTACCTCCTATTTGGGGATGATACGGAGTCTGATGTGCTGACTAATTTTGATAAGGATCTAGGAATTCGGTTTAGCTCGGCCTTGAACTATATTGTCCGCGTCGGCTACATTCTCCATTTGATACTTGTCTTCCCTGTTATTCATTTCTCCCTACGCCAAACGGTGGATGCCTTGGTGTTTGAGGGATCTCCTCCCTTATCAGAAAGTAGGAAGAGATCGTTGGGGTTGACTTTTGTTCTGTTGATCCTCATATATATTGGGTCTACCATGATTCCAAACATTTGGACAGCTTTTAAGTTCACCGGTGCAACCACAGCAGTTTCATTGGGTTTCATATTTCCATCTCTTGTTGCATTGAGATTGAGCCATAAGTGGGATTTGAGCCATGGAGAATGGATTTTATCTTGGTTAATGTTGGTATTGGCTGGGATTGTTAGCATAGTAGGAGTCATTGGCAATGTCTATAGCATGCAGAGTAAGTCTCAATGA 1446 0.4364 MSHRKDSNYSSLPVSSYLELQPHNDSSFDEPGERDYLGSKVVDDDYDDDFEIDIDNYPLVVVGSNHGSGVPGAVFNLTTTVIGAGIMALPATMKVLGVVLGIVLIILMGILSEISVELLVRFSVLCKASSYGEVVQHAMGKPVRIVSEICIIMNNAGVMVVYLIIMGDVMSGSLHHLGVFDQLLGNGLWDHRKIVILVVMVVFLAPLCSLDKIDSLSLTSAASVALAVLFVVVAFFIAFIKLVEGKIDAPRMFPDFSSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELQGRSPQKMNRVGRITTVLCILVYASTALSGYLLFGDDTESDVLTNFDKDLGIRFSSALNYIVRVGYILHLILVFPVIHFSLRQTVDALVFEGSPPLSESRKRSLGLTFVLLILIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSHKWDLSHGEWILSWLMLVLAGIVSIVGVIGNVYSMQSKSQ* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5227 481 PANTHER AMINO ACID TRANSPORTER 46 480 - -
Lja3g5227 481 Pfam Transmembrane amino acid transporter protein 67 471 IPR013057 -
Lja3g5227 481 PANTHER AMINO ACID TRANSPORTER AVT6E 46 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5227 Lja-Chr3 94529197 94531402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5227 6 481 Amino Acid or Auxin Permease AAAP Family AT1G80510 71.602 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5227 - - gmx:100791860 755.362