Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5213 ATGGCGCTTACATCACTCTCTCCGCTCCCAATTCCGCCGCGCTCCTCCGCCAGTTCATGCTTATGCGGCGGGATCAATTTCCGCTCCAACAACCTCTCCATTCATTCCTCTTTTCCTCTTTTCTCTTCTCTCTCCTTCAACTCCAACTCCTTCAATTCCAAGGTCTCTGGCAGAACAACCAGGCGCTCTCACACCGTCTTCGCTGCCTCCGCCGACTACTACAACACTCTCGGTGTCCCCAAATCCGCCACCGTCAAGGAAATCAAAGCCGCTTATCGAAGGTTAGCCCGTCAGTACCATCCTGATGTCAACAAGGAACCTGGTGCCACTGATAAGTTCAAAGAAATTAGCAATGCATATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTATATGATCAATATGGTGAGGCAGGAGTTAAGAGTACCGTGGGAGCTGGATCAAGTGCCTATACGACCAATCCGTTCGATTTATTTGAGACATTTTTTGGGCCAAATATGGGTGGCTTTGGTGGCATGGATCCAACTGGATTTGGAACACAACGTCGTAGAACTGTTACTAAGGGTGAAGACATCCGGTATGATTTCTCATTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTCGATCTTTCGCATTTGGAAACATGTGAAGTCTGTACGGGTACCGGAGCCAAGATAGGGTCCAAGAAGAGAGTGTGCGCAACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGATTGTTCTCACAGGTTTCAGTTTGTCCAAGCTGTGGAGGGGATGGTGAAGTCATATCTGAATATTGTCGGAAATGCAGCGGTGAAGGACGCATAAGGGTTAAGAAAAATATAAAAGTTAAAGTTCCTCCAGGGGTTAGCTCAGGCAGTATTTTAAGAGTTACTGGGGAAGGTGATGCTGGACCTAGAGGGGGCCCTCCAGGAGATCTTTATGTATATCTTGATGTCCAAGAGATACCAGGAATTCAAAGGGATGACATTAATCTCCGCTCAACAATATCAATCAGTTATCTAGATGCTATACTGGGGACTGTCACGAAGGTAAAGACAGTTGAAGGCATTGCTGAGCTACAAATACCTGCTGGTACCCAACCTGGAGATGTCCTCGTTCTAGCGAGGAAAGGTGTGCCAAAATTAAACAAACCATCAATACGTGGTGACCACTTATTTACAGTCAAAGTTACAATACCAAAACGTATTAGTACGCAGGAACGTGAGTTGCTTGAAGAACTTGGTTCGATAGTTGACAAAACAAGCAGTCGTTCAAAATCCCGTCCTCGGACTCAATCTTCCACTGGAAGTTCGGAAAGTCCTGTAGCTCAAAAACCTGAAAGTCCATCACCAACAGTAGCAGAAAATTCAGAAGAACAAAATGATATTTGGAATCAATTAAAGGACTTGGCTGGGTCTGTGGCAAATGGAGCTCTGAAGTGGCTGAAAGATAATCTTTAG 1491 0.4541 MALTSLSPLPIPPRSSASSCLCGGINFRSNNLSIHSSFPLFSSLSFNSNSFNSKVSGRTTRRSHTVFAASADYYNTLGVPKSATVKEIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRALYDQYGEAGVKSTVGAGSSAYTTNPFDLFETFFGPNMGGFGGMDPTGFGTQRRRTVTKGEDIRYDFSLEFSEAIFGTEKEFDLSHLETCEVCTGTGAKIGSKKRVCATCGGRGQVMRTEQTPFGLFSQVSVCPSCGGDGEVISEYCRKCSGEGRIRVKKNIKVKVPPGVSSGSILRVTGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLRSTISISYLDAILGTVTKVKTVEGIAELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTQERELLEELGSIVDKTSSRSKSRPRTQSSTGSSESPVAQKPESPSPTVAENSEEQNDIWNQLKDLAGSVANGALKWLKDNL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5213 496 PANTHER MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN 60 442 - -
Lja3g5213 496 TIGRFAM DnaJ_bact: chaperone protein DnaJ 72 425 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lja3g5213 496 Gene3D DnaJ domain 69 173 IPR036869 -
Lja3g5213 496 MobiDBLite consensus disorder prediction 428 472 - -
Lja3g5213 496 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 206 286 IPR036410 -
Lja3g5213 496 CDD DnaJ_C 190 413 - -
Lja3g5213 496 Gene3D - 335 426 - -
Lja3g5213 496 Gene3D - 189 325 - -
Lja3g5213 496 Pfam DnaJ domain 72 133 IPR001623 -
Lja3g5213 496 CDD DnaJ_zf 219 283 IPR001305 GO:0031072|GO:0051082
Lja3g5213 496 ProSiteProfiles Zinc finger CR-type profile. 206 288 IPR001305 GO:0031072|GO:0051082
Lja3g5213 496 MobiDBLite consensus disorder prediction 425 472 - -
Lja3g5213 496 PRINTS DnaJ domain signature 128 147 IPR001623 -
Lja3g5213 496 PRINTS DnaJ domain signature 108 128 IPR001623 -
Lja3g5213 496 PRINTS DnaJ domain signature 92 107 IPR001623 -
Lja3g5213 496 PRINTS DnaJ domain signature 74 92 IPR001623 -
Lja3g5213 496 SUPERFAMILY HSP40/DnaJ peptide-binding domain 336 421 IPR008971 GO:0006457|GO:0051082
Lja3g5213 496 SMART dnaj_3 71 128 IPR001623 -
Lja3g5213 496 CDD DnaJ 72 125 IPR001623 -
Lja3g5213 496 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 60 442 - -
Lja3g5213 496 ProSiteProfiles dnaJ domain profile. 72 136 IPR001623 -
Lja3g5213 496 Pfam DnaJ central domain 219 283 IPR001305 GO:0031072|GO:0051082
Lja3g5213 496 ProSitePatterns Nt-dnaJ domain signature. 113 132 IPR018253 -
Lja3g5213 496 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 330 IPR008971 GO:0006457|GO:0051082
Lja3g5213 496 SUPERFAMILY Chaperone J-domain 68 178 IPR036869 -
Lja3g5213 496 Gene3D - 219 283 - -
Lja3g5213 496 Hamap Chaperone protein DnaJ [dnaJ]. 69 480 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lja3g5213 496 Pfam DnaJ C terminal domain 192 410 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5213 Lja-Chr3 94434165 94440342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5213 56 179 C2H2 Transcription Factor Family AT1G74250 35.878 7.21e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5213 3 94434165 94440342 Lja3g5213 3 94434165 94440342 ECH