Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5210 ATGGCTTTTTGCCCAATCTTTTGTTGTGGAAATGCTTCGGATCGCAAAGGGAGAGGGAAGAAGCAACCCGCATGGAGGGTGTTTTCTTTGAAAGAATTGCACTCTGCTACAAATAATTTCAACTATGATAACAAGCTTGGTGAAGGTGGATTCGGCAGTGTATACTGGGGCCAGCTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGTCTGGAGCAACAAAGCGGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCAAGAGTACGACACAAGAATCTTCTTAGTCTTCGTGGCTATTGTGCTGAAGGTCAGGAACGGTTGATCGTATATGACTATATGCCGAACTTGAGCCTACTCTCTCATCTTCATGGACAGCACTCATCAGAATGCCTTCTTGATTGGAATCGACGGATGAATATTGCAATAGGGTCTGCCGAGGGAATTGTATATCTTCACCACCAAGCAACACCACATATCATCCACAGAGATATTAAAGCAAGCAATGTGTTATTGGATTCAGACTTCCAGGCTCGGGTTGCTGATTTTGGTTTCGCCAAGTTGATCCCTGATGGTGCAACTCATGTGACCACAAGAGTCAAGGGCACCCTTGGCTACCTTGCACCAGAATATGCCATGTTAGGTAAAGCTAATGAGTGTTGTGATGTGTTCAGTTTCGGAATCCTCCTTCTAGAACTCGCTAGTGGCAAAAAACCACTTGAAAAACTCAGTTCCACAGTGAAGCGTTCAATAAACGATTGGGCCCTGCCATTGGCTTGTGCGAAGAAATTTACTGAATTTGCAGATCCAAGGCTTAATGGCGAGTATGTGGAGGAAGAGCTTAAAAGAATTGTTTTAGTTGCTCTGATATGTGCTCAGAGTCAACCTGACAAGAGACCCACCATGATTGAGGTGGTAGAGCTTCTGAAGGGAGAGTCCAAAGATAAGCTTTCTCAGTTGGAGAACCATGAACTCTTTAAGAACCCTCCAGGTGTAGGACATGATGATGGGACTTCAGCTGCTGAAGGTAGTTCAGACTTCATCTCTGAGGAGAAGGAATCAAAACATGAGTTGGAAGAGAGTACAGAACCATGA 1101 0.4414 MAFCPIFCCGNASDRKGRGKKQPAWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSSECLLDWNRRMNIAIGSAEGIVYLHHQATPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANECCDVFSFGILLLELASGKKPLEKLSSTVKRSINDWALPLACAKKFTEFADPRLNGEYVEEELKRIVLVALICAQSQPDKRPTMIEVVELLKGESKDKLSQLENHELFKNPPGVGHDDGTSAAEGSSDFISEEKESKHELEESTEP* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5210 366 PANTHER OS01G0253100 PROTEIN 1 341 IPR045271 GO:0004714|GO:0006468
Lja3g5210 366 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5210 366 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Lja3g5210 366 PANTHER - 1 341 - -
Lja3g5210 366 MobiDBLite consensus disorder prediction 348 366 - -
Lja3g5210 366 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5210 366 MobiDBLite consensus disorder prediction 325 366 - -
Lja3g5210 366 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Lja3g5210 366 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
Lja3g5210 366 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5210 366 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Lja3g5210 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Lja3g5210 366 CDD STKc_IRAK 46 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5210 Lja-Chr3 94411166 94414863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5210 28 314 Trihelix Transcription Factor Family AT1G70460 50.172 1.50e-93 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Lja3g5210 Pkinase 3.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5210 - - gmx:100788153 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5210 3 94411166 94414863 Lja3g5210 3 94411166 94414863 ECH