Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5205 ATGATGGGCTTGTTCAGATTCAGATGTGGGACCTTGTTTTTCTACATGCTCCTTCTTCTATTCAGAACCTGCCATGCCAACAAGGATCAACACATTCACCAGATATATCCTGGCTTCAGTGCATCTCAGCTAGATTGGAAGGACCATGGTGGGTTCTTCTTGCTATCCAACAGCTCAGCTTTCGCTTTCGGGTTTTTCGGTACCTTGGATGTTTCATTGTTTGTTCTAGTAGTCATTCACTTGAGTAGCTACAAGGTGGTTTGGACAGCAGACAGAGGTTTACTTGTTAGAAATTCTGATAAGTTTGTGTTTGAACATAGTGGAAATGCATATTTGCAAAGTGGGAATGGTGTTGTTTGGGTGACAAACACCACAGGACAAAATGTGAAAGCCATGGTGTTACAGGACTCGGGGAATTTGGTGTTGGTTGGAGATGATGATAGAATTGTTTGGCAGAGTTTTAGCCACCCTACTGATACCCTTTTGCCTGGTCAAGTGTTGGTGGAAGGAATGAAACTGAAAAGCTTCCCCAACAGATTGAACTTGTTTCATTATCTTGGTTTTGTAGCAGGTGATTTGGTTCTGTTTGCTGGGTTTGAACCGCCACAAACGTATTGGTCCTTATCAGGGGAAGCTCCAAAAAATGTCACTGGCAAGGTTCACTCAGCTTCTCTGGTCTCCAATTCATGGAATTTTCATGATAAAAGTGGTGTTTTGCTGTGGAAACTTGTCTTCTCTGATCATTCAGATCCTAAGTCATTTTGGGTGGCTATTTTGGACCCCAATGGTGCAATCTCTTTCTATGATCTTAACAAGGGGAAATCCACTAACCCTGAGCAATTTAAGATACCACATGACCCTTGTGGCATTCCTGAGCCTTGTGATCCTTACAATGTTTGCTTCTTTGAGAATTGGTGTGAATGCCCTGCACTTCTCAAGTCGCGGTTCAATTGCAAACCTCCAAACATCACAACATGTTCCAGAAGACCTTCAAGTACAGAACTTGTGTATGTTGGTGAAAAGCTTGATTATTTTGCACTTAAGTATGTTGCACCAGTTTCAAAATCAACCTTGAATTCTTGCAAAGATGCTTGTTTAGGAAATTGTTCTTGCCTGGTGCTGTTCTATGAAAACAGCACTGGTAGATGCTTTCATTTTGATCAAACCGGGAGCTTCCAACGCTCTAAAGGAAGCAATGGTGGTTATGTTTCATATATGAAAATTTCCACTGATGTGAATGTTAATGGAAATGGCAGCAAAAATAAAAGGAGGAACATGGTGCTGGTTTTTGTGGTAGTAATTCTTACAATCCTTGTTATTGCTGGCCTCATAACAGGATTTTGGTACTTCAACAAGAAGAAGAATCTTGATGAGTACCCTCAAGAGGATGATGATGATTTCTTTGATAATCTCTCTTCGATGCCAGCACGATTCACTTACAATTCTCTTGCTAGAGCAACTGAGAACTTCTCCACAAAAATTGGTGAAGGAGGTTTTGGCTCAGTGTACCTTGGTGTGCTTGAAGATGGAACCCAATTAGCAGTGAAAAAATTGGAAGGTGTTGGACAAGGTGCTAAAGAGTTCAAAGCAGAAGTGTCCACAATTGGAAGCATACATCATGTTCATCTGGTGAAGCTAAAAGGGTTTTGTGCTGAAGGCCCACATCGCCTACTTGTCTATGAGTACATGGCAAGAGGCTCTTTAGATAAGTGGATCTTCAAAAACAGTGAAAACACTTTCTTGTTGAATTGGGAAACAAGGTTCAACATTGCAGTAGGCACTGCAAAGGGTTTAGCATATCTTCATGAGGAATGTGAAGTGAGGATCATCCACTGTGATATCAAGCCACAAAATGTTCTTCTTGATGACAATTTCATGGCTAAAGTCTCAGATTTTGGATTGGCTAAGCTAATGAGCAGAGAACAAAGTCATGTCTTCACAACTATGAGAGGCACAAGAGGGTATTTGGCTCCAGAATGGATTACTAACTATGCAATTTCAGAGAAGAGTGATGTGTTCAGCTATGGGATGCTCTTGCTTGAGATCATTGGAGGAAGGAAGAACTATGATCAGTGGGAAGGTTCTGAGAAAGCACATTTTCCTTCCTATGTCTTCAGAATGATGGAAGAAAGTAAACTGAGAGAGGTTCTTGATCAAAAGATAGATATTGATGAGAAGGATGATAGAGCTGTAACTGCTATTAAAGTTGCACTTTGGTGCATACAAGATGATGTGAGTTTGAGGCCTTCAATGAGTAAAGTAGCTCAAATGCTTGAAGGTTTGTGCACTGTAACTGATCCTCCTTCATTGTCTCAATCCACTACTTATTCAGCTTTCTTGAAAATGAGCAGTGGAGAAGCAAGTTCTTCAGGACAGGCTAGTTTTTATAGTAATGTTCCCTTGTCCTGTGTTCAGCTATCAGGACCAAGATGA 2433 0.4094 MMGLFRFRCGTLFFYMLLLLFRTCHANKDQHIHQIYPGFSASQLDWKDHGGFFLLSNSSAFAFGFFGTLDVSLFVLVVIHLSSYKVVWTADRGLLVRNSDKFVFEHSGNAYLQSGNGVVWVTNTTGQNVKAMVLQDSGNLVLVGDDDRIVWQSFSHPTDTLLPGQVLVEGMKLKSFPNRLNLFHYLGFVAGDLVLFAGFEPPQTYWSLSGEAPKNVTGKVHSASLVSNSWNFHDKSGVLLWKLVFSDHSDPKSFWVAILDPNGAISFYDLNKGKSTNPEQFKIPHDPCGIPEPCDPYNVCFFENWCECPALLKSRFNCKPPNITTCSRRPSSTELVYVGEKLDYFALKYVAPVSKSTLNSCKDACLGNCSCLVLFYENSTGRCFHFDQTGSFQRSKGSNGGYVSYMKISTDVNVNGNGSKNKRRNMVLVFVVVILTILVIAGLITGFWYFNKKKNLDEYPQEDDDDFFDNLSSMPARFTYNSLARATENFSTKIGEGGFGSVYLGVLEDGTQLAVKKLEGVGQGAKEFKAEVSTIGSIHHVHLVKLKGFCAEGPHRLLVYEYMARGSLDKWIFKNSENTFLLNWETRFNIAVGTAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFMAKVSDFGLAKLMSREQSHVFTTMRGTRGYLAPEWITNYAISEKSDVFSYGMLLLEIIGGRKNYDQWEGSEKAHFPSYVFRMMEESKLREVLDQKIDIDEKDDRAVTAIKVALWCIQDDVSLRPSMSKVAQMLEGLCTVTDPPSLSQSTTYSAFLKMSSGEASSSGQASFYSNVPLSCVQLSGPR* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5205 810 CDD PAN_AP_plant 353 409 - -
Lja3g5205 810 SMART blect_4 45 157 IPR001480 -
Lja3g5205 810 Gene3D Phosphorylase Kinase; domain 1 455 562 - -
Lja3g5205 810 ProSiteProfiles Bulb-type lectin domain profile. 39 155 IPR001480 -
Lja3g5205 810 Gene3D - 49 156 IPR036426 -
Lja3g5205 810 ProSiteProfiles PAN/Apple domain profile. 326 409 IPR003609 -
Lja3g5205 810 SMART serkin_6 488 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5205 810 Pfam Protein kinase domain 491 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5205 810 CDD B_lectin 50 157 IPR001480 -
Lja3g5205 810 ProSitePatterns Protein kinases ATP-binding region signature. 494 517 IPR017441 GO:0005524
Lja3g5205 810 SMART ntp_6 329 408 IPR003609 -
Lja3g5205 810 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 174 IPR036426 -
Lja3g5205 810 Gene3D Transferase(Phosphotransferase) domain 1 563 765 - -
Lja3g5205 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Lja3g5205 810 Pfam D-mannose binding lectin 86 167 IPR001480 -
Lja3g5205 810 CDD STKc_IRAK 494 761 - -
Lja3g5205 810 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 7 810 - -
Lja3g5205 810 SUPERFAMILY Protein kinase-like (PK-like) 471 759 IPR011009 -
Lja3g5205 810 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 7 810 - -
Lja3g5205 810 ProSiteProfiles Protein kinase domain profile. 488 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5205 810 PIRSF SRK 7 807 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5205 Lja-Chr3 94338668 94341830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5205 435 768 Receptor kinase-like Gene Family AT5G20050 43.417 3.38e-89 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lja3g5205 Pkinase 6.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5205 - - gmx:100786024 1286.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5205 3 94338668 94341830 Lja3g5205 3 94338668 94341830 ECH