Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5200 ATGGCGCAAATTCTGCTACATGGGATTCTCCATGCCACAATCTATGAGGTCGATAAGCTCAAGACTAGTGGTGGCAATGTTATTACCAAGCTCGTTCAAAACATTGAGGAGACGGTTGGTTTTGGAAAAGGAGTTACTAAACTTTATGCAACCATTGATCTAGAGAAGGCACGAGTGGGTAGAACAAGAGTTATAGAAAAGGATCATAAAAATCCTAGATGGAATGAGTCTTTTCACATTTACTGTGCCCACATGGCAGCAGACATCATATTCACTGTGAAAGATGATAACCCCATTGGAGCAACCTTAATTGGAAGAGCATATGTACAAGGATGTAAGGTTTCTATGTACCAAGATGTCCATGTCCCAGACAATTTTGTCCCTAAAATACCACTTGCTGGAGGCCAGAGTTACAAGCCTCATAGATGTTGGGAGGATGTTTTTGATGCAATCAATAATGCAAGGCACTTAATTTACATTACTGGATGGTCTGTTTATACTAAGATTACATTAGTGAGGGATTCTAGGAGGCCAAAACCTGGAGGAGACACAACACTTGGTGTCAGGGTTTTGATGCTTGTTTGGGATGACAGAACATCTGGTTTGTTGAAAAAAGATGGGTATATGGGGACTCATGATCAAGAAACTAAGGAGTGCTTTAATGGTTCTGAAGTGCACTGTGTTTTATGTCCTAGAAATCCTGATGATGGTGGGAGTGTTGTTCAGGACATAGAAATTGCCACCATGTTTACTCATCATCAAAAGATTGTGGTTGTGGACAGTGAGTTGCCGAGTGGAGTGTCAGAGAAGAGAAGAATTGTGAGTTTTGTTGGGGGAATTGATCTATGTGATGGAAGATATGATACTCAGTTCCATTCACTTTTCAGAACCCTTGGCACAGTACATCATGATGATTTTCATCAAATTAACTTCCCTGGTGCTTCAATAAAAAAGGGTGGCCCCAGGGAACCTTGGCATGACATCCACTCTAGGCTTGAAGGGCCTGTTGCTTGGGATGTTCTGTTCAACTTTGAGCAGAGATGGAGGAAGCAAGGTGGAAAGGATTTGCTTGTTCCACTGAGAGACCTTGAAGATGTCATCATTCCACCATCCCCAGCAACTTTTCCCAATGACCATGAGACATGGAATGTTCAATTATTCAGATCAATTGATGGTGGAGCTGCTTTTGGGTTCCCAGAGAATCCTGAAGATGCTGCTAGAGCAGGGCTTGTTAGTGGCAAAGACAACATAATAGACCGCAGCATTCAAGATGGTTACATCAATGCTATTAGAAGAGCAAAGAATTTCATCTATATTGAGAACCAGTATTTCCTTGGAAGCTGTTATGCTTGGAGTGCTGATGGTATTAAGCCTGAAGATATTGGTGCTTTGCATCTGATCCCAAAGGAGCTTTCATTGAAGATTGTTAGCAAGATTGAAGCAGGGGAAAGGTTCAGTGTGTACATTGTGGTTCCAATGTGGCCAGAGGGTTTCCCAGAGAAAGGGTCAGTTCAGGCAATATTGGACTGGCAGAGGAGAACAATGGATATGATGTACAAGGATGTTGTTCTGGCACTTAATGCCAAGGGAATTGAGGAAGATCCTAGGAACTATTTGACATTCTTCTGCCTTGGCAATAGAGAGGTGAAGAAACAAGGAGAGTATGAGCCTGTAGAAAGACCAGAACCTGATACAGATTACAGGAGAGCCCAAGAGGCCAGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCCAACATCAACCAGAGATCAATGGATGGTGCTAGAGACTCAGAGATAGCCATGGTTTCTCTCTACCAGGGTGCTTATCAACCCTATCATTTGGCTGCCAAACAACCAGCAAGGGGTCAGATTCATGGCTTCCGCATGTCATTATGGTATGAGCACCTTGGCATGCTCCATGACTCCTTCCTCCATCCTGAAAGTGAAGAATGTATTAGAATGCAAGACCTTCCTGGACACCTGCTCCGCTACCCTGTTGGGATTTCTGAGGAAGGAAATGTGACAGTGCTGCCAGGATTTGAATTCTTCCCTGACACCAAGGCTCCTGTTCTTGGCAAAAAAGATGACTACCTTCCACCCATCCTTACCACCTAG 2154 0.4322 MAQILLHGILHATIYEVDKLKTSGGNVITKLVQNIEETVGFGKGVTKLYATIDLEKARVGRTRVIEKDHKNPRWNESFHIYCAHMAADIIFTVKDDNPIGATLIGRAYVQGCKVSMYQDVHVPDNFVPKIPLAGGQSYKPHRCWEDVFDAINNARHLIYITGWSVYTKITLVRDSRRPKPGGDTTLGVRVLMLVWDDRTSGLLKKDGYMGTHDQETKECFNGSEVHCVLCPRNPDDGGSVVQDIEIATMFTHHQKIVVVDSELPSGVSEKRRIVSFVGGIDLCDGRYDTQFHSLFRTLGTVHHDDFHQINFPGASIKKGGPREPWHDIHSRLEGPVAWDVLFNFEQRWRKQGGKDLLVPLRDLEDVIIPPSPATFPNDHETWNVQLFRSIDGGAAFGFPENPEDAARAGLVSGKDNIIDRSIQDGYINAIRRAKNFIYIENQYFLGSCYAWSADGIKPEDIGALHLIPKELSLKIVSKIEAGERFSVYIVVPMWPEGFPEKGSVQAILDWQRRTMDMMYKDVVLALNAKGIEEDPRNYLTFFCLGNREVKKQGEYEPVERPEPDTDYRRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMVSLYQGAYQPYHLAAKQPARGQIHGFRMSLWYEHLGMLHDSFLHPESEECIRMQDLPGHLLRYPVGISEEGNVTVLPGFEFFPDTKAPVLGKKDDYLPPILTT* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5200 717 CDD C2_plant_PLD 2 109 - -
Lja3g5200 717 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 576 603 IPR001736 GO:0003824
Lja3g5200 717 SMART C2_3c 9 124 IPR000008 -
Lja3g5200 717 Gene3D Endonuclease Chain A 398 618 - -
Lja3g5200 717 SMART pld_4 248 286 IPR001736 GO:0003824
Lja3g5200 717 SMART pld_4 576 603 IPR001736 GO:0003824
Lja3g5200 717 PANTHER PHOSPHOLIPASE D ALPHA 1 2 109 - -
Lja3g5200 717 Pfam Phospholipase D Active site motif 577 603 IPR001736 GO:0003824
Lja3g5200 717 Pfam Phospholipase D Active site motif 248 286 IPR001736 GO:0003824
Lja3g5200 717 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 248 286 IPR001736 GO:0003824
Lja3g5200 717 Gene3D C2 domain 4 128 IPR035892 -
Lja3g5200 717 SUPERFAMILY Phospholipase D/nuclease 374 665 - -
Lja3g5200 717 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 119 IPR035892 -
Lja3g5200 717 SUPERFAMILY Phospholipase D/nuclease 109 366 - -
Lja3g5200 717 ProSiteProfiles C2 domain profile. 1 126 IPR000008 -
Lja3g5200 717 PANTHER PHOSPHOLIPASE D ALPHA 1 110 717 - -
Lja3g5200 717 Pfam C2 domain 9 110 IPR000008 -
Lja3g5200 717 Gene3D Endonuclease Chain A 133 361 - -
Lja3g5200 717 PANTHER PHOSPHOLIPASE D 2 109 IPR015679 -
Lja3g5200 717 PANTHER PHOSPHOLIPASE D 110 717 IPR015679 -
Lja3g5200 717 CDD PLDc_pPLDalpha_2 414 628 - -
Lja3g5200 717 PIRSF PLD_plant 108 717 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lja3g5200 717 PIRSF PLD_plant 1 110 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lja3g5200 717 Pfam Phospholipase D C terminal 667 707 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5200 Lja-Chr3 94306319 94313616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5200 110 717 Phospholipase D Gene Family (Wang group) AT3G15730 76.803 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5200 K01115 - qsu:112037256 1183.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2139 3 25057697 25061954 Lja3g5200 3 94306319 94313616 ECH
Lja3g5200 3 94306319 94313616 Lja3g5200 3 94306319 94313616 ECH
Lja3g5200 3 94306319 94313616 Lja3g2139 3 25057697 25061954 PCT