Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5198 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCTCTTGGGTTTCAGAGATTCGTCATCCATTATTGAAAAGGAGGGTGTGGCTGGGAACATTTGATACTGCTGAAGAAGCAGCTAGAGCATATGACGAGGCAGCAATTTTGATGAGTGGAAGAAACGCCAAAACTAACTTCCCAGTTGTGGATGATCAAATGGGAAATTCTACTTCTGCTTCATTTTCCACAACATTTTCTACAGTTCTCAGTGCAAAGCTGAGGAAGTGCTTCAAGTCCCCTTCACCTTCCCTCACATGCCTAAGGCTTGATGCAGAGAATTCCCACTTCGGCGTGTGGCAGAAGCAAGCCGGGCCTCGCTCCGAATCAAACTGGATCATGATGGTTGAGTTAGAAAGGAAGAACAAGAATGATCACAGAGCTTCTTCTGATTCAGAATTGCCAGAGAAGAATAAGCAAGAGAAGGTAATAAAACCAGAAGAAAGTACTAACAACAATGGCATGGATGAGGAGCAGAGGATTGCACTGCAGATGATAGAAGAACTTCTGAACAGGAATTGA 567 0.4462 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDEAAILMSGRNAKTNFPVVDDQMGNSTSASFSTTFSTVLSAKLRKCFKSPSPSLTCLRLDAENSHFGVWQKQAGPRSESNWIMMVELERKNKNDHRASSDSELPEKNKQEKVIKPEESTNNNGMDEEQRIALQMIEELLNRN* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5198 188 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Lja3g5198 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 188 - -
Lja3g5198 188 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Lja3g5198 188 MobiDBLite consensus disorder prediction 137 175 - -
Lja3g5198 188 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lja3g5198 188 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lja3g5198 188 MobiDBLite consensus disorder prediction 137 169 - -
Lja3g5198 188 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lja3g5198 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE 1 188 - -
Lja3g5198 188 PIRSF PTI6 130 160 IPR017392 GO:0003700
Lja3g5198 188 PIRSF PTI6 2 114 IPR017392 GO:0003700
Lja3g5198 188 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lja3g5198 188 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lja3g5198 188 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5198 Lja-Chr3 94298718 94300133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5198 1 188 AP2-EREBP Transcription Factor Family AT1G15360 58.252 3.30e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja3g5198 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5198 - - gmx:100796962 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5198 3 94298718 94300133 Lja3g5198 3 94298718 94300133 ECH