Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5190 ATGAGAACAGTTTATGTGCCAATAGGTCAAAACAAATCCGAGGCTGGATGCTTAATTAAGAACTTGTCCATGAAGGGTCCTTTCATGGAAGATCTATCTATTCGCGTTCCTGCCAAGAAACCAAATCCAATTATCCTCTCCCCTGAAGAAAGCCTGGTTGAAGAACTCAGTGACATAGGGAACTTATCCTCACCGTTATCGGGTCCTCGAGCATCGCAGAATACTGAGAACTCTTTCCTCCCTCCAGACTCTGAGGAAAAAGAATGTGTTTGGGATGCTTCTTTGCCTCCTAGCGGCAATGTCAGTCCACTTAGTAGTATTGATGGTGTTTTCAGAGCAATGAGCATTGCTAATAGTTGTGCTAGTACATATCAGAGTGATGCAATCACTAGTGATGGCATGCTTAGTTTAGATACAAAAAGTAGTGCTAGTCGCGCAAGTGATAGCAGTGGCCTCAGTGATGACAGTAACTGGAGCAATGTTACTGGAAGTGCCAATAAGCCTCACAAAGGAAATGATCCCAGGTGGAAGGCTATCCTGGCCATCCGATTGCGGGATGGAATTTTGGGCATGAGTCATTTTAGATTACTCAAGCGACTTGGCTGCGGTGATATTGGAAGTGTATATCTCTCAGAACTTAGTGGAACTCGGTGTTATTTTGCTATGAAAGTCATGGATAAAGCATCCTTAGCAAGCAGAAAGAAGCTGGGTAGAGCGCAGACTGAGAGGGAGATATTGCAGTTGCTGGACCATCCATTTCTTCCAACTTTGTATACACATTTTGAGACTGACAGATTCACCTGCTTGGTAATGGAATATTGTCCTGGTGGTGATCTACACACTTTAAGGCAGCGGCAACCTGGGAAACATTTCTCTGAATATGCTGCTCGCTTTTATGCTGCTGAAGTCCTGCTTGCTCTTGAATATCTTCACATGCTTGGAGTTGTGTACAGAGACCTTAAACCTGAAAATGAATTGGTGCGAGATGATGGTCACATAATGCTCTCAGATTTTGATCTTTCCCTCAGATGCACTGTATCGCCAACTCTTATTAGAACCTCCTATAATGGTGACCCTTCAAAGCAGGCTGGGGGCGCATTCTGTGTTCAACCTGCTTGTATTGAGCCAACTTCAGTATGCATCCAACCAGCATGTTTTATTCCTCGGTTCTTTCCTCAGAAAAACAAGAAGTCACGAAAGCCGAGAGCTGAACCCGGGTTTCCTTGCAGCACACTTCCTGAGCTGGTTGCTGAGCCTACTGCAGCGCGATCCATGTCCTTTGTCGGTACACACGAATACCTTGCCCCTGAGATTATCAAAGGGGAAGGTCATGGCAGTGCAGTTGATTGGTGGACATTTGGAATTTTCTTGCATGAGTTATTGTATGGTAAAACCCCTTTCAAAGGGTCCGGAAACCGTGCAACACTTTTCAATGTAGTTGGGCAGCAGCTCAAGTTTCCTGAATCACCAGCCACCAGTTATGCCGGCCGGGATCTGATTCGTGGGTTGCTGGTGAAGGAGCCGCAACATCGTCTTGGGGTTAAGAGGGGAGCAACTGAGATCAAGCAGCACCCGTTCTTTGAAGGTGTGAACTGGGCATTGATCAGATGCAGCACGCCACCGGAAGTGCCGAGACCTGTAGAAAATGAGCCGCCCCCACCAGGGAAAGTTGGAGCAGTTGATAATACTGTTGGGATTGGCAGCACTAGTAAGAGGGTAGTAGGTGGTACTACTGAGATGAAGCCAGGAGGGGGTAGATATCTGGACTTTGAGTTCTTTTAG 1782 0.4635 MRTVYVPIGQNKSEAGCLIKNLSMKGPFMEDLSIRVPAKKPNPIILSPEESLVEELSDIGNLSSPLSGPRASQNTENSFLPPDSEEKECVWDASLPPSGNVSPLSSIDGVFRAMSIANSCASTYQSDAITSDGMLSLDTKSSASRASDSSGLSDDSNWSNVTGSANKPHKGNDPRWKAILAIRLRDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLGRAQTEREILQLLDHPFLPTLYTHFETDRFTCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENELVRDDGHIMLSDFDLSLRCTVSPTLIRTSYNGDPSKQAGGAFCVQPACIEPTSVCIQPACFIPRFFPQKNKKSRKPRAEPGFPCSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYAGRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVENEPPPPGKVGAVDNTVGIGSTSKRVVGGTTEMKPGGGRYLDFEFF* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5190 593 ProSiteProfiles Protein kinase domain profile. 194 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5190 593 MobiDBLite consensus disorder prediction 60 80 - -
Lja3g5190 593 MobiDBLite consensus disorder prediction 60 95 - -
Lja3g5190 593 PANTHER FLIPPASE KINASE 1-RELATED 1 593 - -
Lja3g5190 593 MobiDBLite consensus disorder prediction 141 171 - -
Lja3g5190 593 Pfam Protein kinase domain 195 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5190 593 Pfam Protein kinase domain 424 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5190 593 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 593 - -
Lja3g5190 593 Gene3D Phosphorylase Kinase; domain 1 192 277 - -
Lja3g5190 593 Gene3D Transferase(Phosphotransferase) domain 1 423 544 - -
Lja3g5190 593 CDD STKc_phototropin_like 192 546 - -
Lja3g5190 593 SMART serkin_6 194 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5190 593 Gene3D Transferase(Phosphotransferase) domain 1 278 348 - -
Lja3g5190 593 SUPERFAMILY Protein kinase-like (PK-like) 175 550 IPR011009 -
Lja3g5190 593 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5190 Lja-Chr3 94247423 94261030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5190 1 593 AGC Kinase Gene Family AT2G44830 72.960 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja3g5190 Pkinase 2.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5190 - - mtr:MTR_8g006870 1017.3