Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5181 ATGGATGTAGTTCCTGGTTCTGATATTCAGCGTGCTGTGGAATCCGATTGCTCTCAGCCGAATTCAAGAACAAATTATCTGTACCAGGTAGAACCTATTAACTGCGTTGAAAATCGTGAAGATGATATGTTTGAATACGGCGATCAACTTAATGACTCATTACTGAAGACAGAAGGACAGGGACCTACTGTTAGTGAACTCTTGGCCAATTCATATTGCCGAAACACCGGAGATTTATTTTTTGACTTTCAAGTGGAAAACCAAAAGAAATCTTGCAGTTTGCATGCTATTGAAGATAATGACATAAATGAACCTCGCTTAACCTCTGCAAACTCTCTCTCTATAGTTGATTTGACCGAAAGCGAATCGCCAAACACCGGTAAGGAAGGAGCACTGTCATTTTCTGAACCCACTTGGCTGAAGGAAGATGTGTCTATAGCATTATGGGTCAAGTGGAGAGGGACGTGGCAGGTCTGCATAAAATGCGCAAGGGCTGACTGGCCATTATCAACATTGAAAGCAAAACCGACTCATGAACAGAAGAGATATTTCGTCATCTTTTTCCCTCTCACAAAGGTTTACTTTTGGGCTGATACGCTGCTTGTTCGATCGATTGATGAGTTTCCACAGCCTATAGCATATAAAACTCACCAAGAAGGACTGGAAATGGTAAAAGACTTGAGTGTTGCGCGACGGTTCATAATGCAAAAGCTTGCTGTCAGCATACTGAACACTCTTGATCAGCTTCATTCTAATGCTTTAGTAGGAACTGCTTGTGATGTGATGGTCTGGAAGGAACTTGCTATGGAGGCTTCTCGTTGTAACACTTATTCGGATTTGGGGAGAATGCTTCTCAAGCTACTAAATAGCATAGCGCCATGCTACATAAATGCAGACTGGGTTAATTCTTCGTCTGACTCTTGGGCGGAACGATGCCAAAATACAATTAGTGCCGAATCTTTAGAACTGCTGAAGGAGGAAGTGGTTGATTCTATTCTTTGGAATGATGTGCAAAATTTCGGGGGTGTACCGGTGCAACCGACACTTGGTTCTGAGTGGAAAACCTGGAAGCAAGATGTAATGAAATGGTTTTCCACACCTCCTTCCTTTTCTAGCAGCAGTGACATGCAGCAGACGCCAGATAGCGCGTACCGAGTAAGCCTTCAGATTGGTAGAAATAGGCGCAAGCTCCAAGTTCGTCGTGCTTATACACATACTTCACTGGCAGGAACCAAGGGTTCAGATCACTCTACTACTCTTGAGACTAACCCAGGTTTTTCTAAGAACCAGGACGCAGTGAGTGCATTGGCAATTGTGACTTCTGAACAGGAAATTTTTAGAGAAGTACATGTGGAAACTGATTTACCAAGTAATTTGACCGATCAATGGAATGAAATTGTAGTTGAGGGTATAGATTCTGAGGTCTTGAATTGCAATGGAATGGAATCAACACCTATTGATGAAATGGCTGGTGAAAAAATTATGGAACCTGGAACTAAGAATCAACAGTGCATAGCTTATGTTGAAGCCAAGGGAAGGCAGTGTGTGAGATCGGCGAATGATGGTAATAAATACTGCGGCGTGCATATTCGTTCTTTGAGTTGCGCAAGACAAGCCAAAAAACCTGTTCCAATTGAAACTCCAATGTGTGGAGGTACAGCCAATGCTGGTACTAGATGTAAGCATCATTCTCTTCCTGACTCTCCATTCTGGAAGAAACATTGGCCCCGTGCTGAAACCTGTAGCAAACTGAAGAGGAAACATGAAGGAAATTGCACTCGTTCAGAGGGCTTGATCTGCAAAGATATGGTACTAGTAAATGATGAAAGTCCATTGCAGGTGGATCCGGTGTCAGCCACGCATGGTGATTGCTTTCTTGACAAGTTACCTGGGAATCTCGCCCTTTCTGACAATGATCATAATGCAACGGAGGATGCACTTCACTGTTTAGGCTGTCCTCCATATGACAATGAGGACCCTTGTTTGGAACCACTTTTGTGGTATGTCTTGTACTGTGAAAAGCACCTTCCGAACTGGCTCAAACGCTCGAGAAATGGGAAGCGTAGGATAATATCGAAGGAACTTTTCACGGAAATTTTGAGGGACTGCAGCTCATGGGAGCAGAAGGTGCACCTTCATAAAGCATGTGCGATTTTTTACATACTGTTCAAAAGCATTCTCAGAAACCCGGAATCGAAGGCAGTTCAATTCCAATGTGCTATGACTGAAGCAACGAAAGATCCTAGTGTTGCAGAATTACTTAAAAGGTTGATAATTAGTGAAAAGGACAGAATCAAATTGGTTTTGGGATTGGATGATGACATAGATATATCCTCACTCATGGAAGGAACATGGCTTCCTCCTACCGCGATTAATGACAGCTTTGATGATGAAAATGGCGTTAAGTGTAAGATCTGCAATGCAGAATTTGCTGATGACCGAACACTTGGTTACCATTGGATGGGAAATCATGAAAAGGAAACCCAGTGTCTGTTCAGAGGTTTTGCTTGTGCCATTTGCCTGAGTTTTTTTACTGAGAAGAAACTATTAGAAAACCATGTTCAGGGCCGACACCGGATGCAGTTTGTTGAGCAGTGCTCGCTTCTCCAGTGTATTCCTTGTGGTAGTCATTTTGGAAACATGGAGCAATTATGGCTTCATGTTCTTTCAGTTCACCCTGTCGAATTTAAGTTGCAATTGAAAGTTCCTGAGCAGGAAACTTTAACTGTGCTGCCTTGCGAGGCTTCTCTGGAAAATCTTGAGCAGGGAAATTCAGCTTCTTTGGACAATGATTCTCAGGATCCAGGTACTTTGATGAAGTTCAGCTGCAGACATTGTGAGTTGAAATTTAACTTACTACCTGACCTCGGTCGCCACCATCAAGCTGCGCATATGGAGCGCAATCAAATTAGCAGCAAAGTGGCAAAAAGAAGAGCTCTTAGTTCTGCTCACAGATTGGAATCCGGCAGACTTGGCCGTTCGAAGATTAAAAAAGGTTCGTCAGCCGCATCATGTCGGACCAGAAGTAGGGCCAATGCTAATTTAAAGCGCCGTATTCAGGAGACAAAGTCACTTAGGGTGAAGGGAACAACTGTCCATTTGAATTCAGGGTCCTTGCAAAAGGGTATAGTATGTGATGACATAAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTAGAAGATCAAGAAACTCTAAATTCTCAATTCCAATCGCCTTGGGAGAGCTTCACATATGTTACAAAACCCAGGCTTTATCAATCACTTATTATTCATGATGAGAGTCTGCGGATGGGATGCTACTGCTCATTTTCTACCTGCTGTCCTGAAACATGTGATCATGTGTGCCTTTTTGATAATGACTTTGATGATGCGAAAGACGTATTTGGAAAACCAATGCGTGGAAGGTTCCCGTATGATGAAAACGGCCGTATAATACTGGAGGAAGGTTACCTTGTGTATGAGTGTAACAATTTGTGCAGATGCAATAAAAGTTGTCCAAACAGAATACTGCAGAATGGGATTCGGGTGAAACTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGGAGTAAGGGCTGGTGAGGCTATTTTGCGCGGTACGTTTATCTGTGAGCTCATAGGAGAGGTTTTAGATGAGCGTGAGGCACACGTCAGACTCAAAAGATATGGCAAAGAACATTGCAGTTATTTTTATGACATTGATGCTCGCTTTAATGATATCAGTAGAATGATTGAAGGACAACCCAAGTATGTTATTGATGCCACTAGTTTTGGGAATGTCTCTAGGTTCATCAATAGCAGCTGCTCACCCAATCTTGTGAATTACCAAGTTTTTGTTGAGAGCATGGACTGTAAGCGTTCCCATATTGGTCTTTATGCGAGTCGAGACATTGCTTTGGGTGAAGAATTGACATTTGATTATCACAAGGTTGGGCCTGGAAAAGGAACTCCTTGTCTTTGCGGATCTTCGAATTGCGGGGGACGCCTTTACTAG 3996 0.4282 MDVVPGSDIQRAVESDCSQPNSRTNYLYQVEPINCVENREDDMFEYGDQLNDSLLKTEGQGPTVSELLANSYCRNTGDLFFDFQVENQKKSCSLHAIEDNDINEPRLTSANSLSIVDLTESESPNTGKEGALSFSEPTWLKEDVSIALWVKWRGTWQVCIKCARADWPLSTLKAKPTHEQKRYFVIFFPLTKVYFWADTLLVRSIDEFPQPIAYKTHQEGLEMVKDLSVARRFIMQKLAVSILNTLDQLHSNALVGTACDVMVWKELAMEASRCNTYSDLGRMLLKLLNSIAPCYINADWVNSSSDSWAERCQNTISAESLELLKEEVVDSILWNDVQNFGGVPVQPTLGSEWKTWKQDVMKWFSTPPSFSSSSDMQQTPDSAYRVSLQIGRNRRKLQVRRAYTHTSLAGTKGSDHSTTLETNPGFSKNQDAVSALAIVTSEQEIFREVHVETDLPSNLTDQWNEIVVEGIDSEVLNCNGMESTPIDEMAGEKIMEPGTKNQQCIAYVEAKGRQCVRSANDGNKYCGVHIRSLSCARQAKKPVPIETPMCGGTANAGTRCKHHSLPDSPFWKKHWPRAETCSKLKRKHEGNCTRSEGLICKDMVLVNDESPLQVDPVSATHGDCFLDKLPGNLALSDNDHNATEDALHCLGCPPYDNEDPCLEPLLWYVLYCEKHLPNWLKRSRNGKRRIISKELFTEILRDCSSWEQKVHLHKACAIFYILFKSILRNPESKAVQFQCAMTEATKDPSVAELLKRLIISEKDRIKLVLGLDDDIDISSLMEGTWLPPTAINDSFDDENGVKCKICNAEFADDRTLGYHWMGNHEKETQCLFRGFACAICLSFFTEKKLLENHVQGRHRMQFVEQCSLLQCIPCGSHFGNMEQLWLHVLSVHPVEFKLQLKVPEQETLTVLPCEASLENLEQGNSASLDNDSQDPGTLMKFSCRHCELKFNLLPDLGRHHQAAHMERNQISSKVAKRRALSSAHRLESGRLGRSKIKKGSSAASCRTRSRANANLKRRIQETKSLRVKGTTVHLNSGSLQKGIVCDDISFGKESIPVICVEDQETLNSQFQSPWESFTYVTKPRLYQSLIIHDESLRMGCYCSFSTCCPETCDHVCLFDNDFDDAKDVFGKPMRGRFPYDENGRIILEEGYLVYECNNLCRCNKSCPNRILQNGIRVKLEVFKTEKKGWGVRAGEAILRGTFICELIGEVLDEREAHVRLKRYGKEHCSYFYDIDARFNDISRMIEGQPKYVIDATSFGNVSRFINSSCSPNLVNYQVFVESMDCKRSHIGLYASRDIALGEELTFDYHKVGPGKGTPCLCGSSNCGGRLY* 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5181 1331 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1032 - -
Lja3g5181 1331 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1038 1331 - -
Lja3g5181 1331 SMART preset_2 1045 1161 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja3g5181 1331 MobiDBLite consensus disorder prediction 407 426 - -
Lja3g5181 1331 ProSitePatterns Zinc finger C2H2 type domain signature. 943 964 IPR013087 -
Lja3g5181 1331 Gene3D Classic Zinc Finger 789 862 - -
Lja3g5181 1331 Pfam SET domain 1188 1308 IPR001214 GO:0005515
Lja3g5181 1331 MobiDBLite consensus disorder prediction 963 982 - -
Lja3g5181 1331 Pfam Pre-SET motif 1048 1169 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja3g5181 1331 SUPERFAMILY SET domain 1039 1321 IPR046341 -
Lja3g5181 1331 ProSitePatterns Zinc finger C2H2 type domain signature. 871 892 IPR013087 -
Lja3g5181 1331 ProSiteProfiles SET domain profile. 1177 1309 IPR001214 GO:0005515
Lja3g5181 1331 MobiDBLite consensus disorder prediction 990 1010 - -
Lja3g5181 1331 ProSiteProfiles Post-SET domain profile. 1315 1331 IPR003616 -
Lja3g5181 1331 ProSitePatterns Zinc finger C2H2 type domain signature. 803 824 IPR013087 -
Lja3g5181 1331 ProSitePatterns Zinc finger C2H2 type domain signature. 837 858 IPR013087 -
Lja3g5181 1331 SMART c2h2final6 801 824 IPR013087 -
Lja3g5181 1331 SMART c2h2final6 941 964 IPR013087 -
Lja3g5181 1331 SMART c2h2final6 835 858 IPR013087 -
Lja3g5181 1331 SMART c2h2final6 869 892 IPR013087 -
Lja3g5181 1331 Gene3D SET domain 1023 1312 IPR046341 -
Lja3g5181 1331 ProSiteProfiles Pre-SET domain profile. 1098 1174 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja3g5181 1331 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1032 - -
Lja3g5181 1331 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1038 1331 - -
Lja3g5181 1331 SMART set_7 1177 1315 IPR001214 GO:0005515
Lja3g5181 1331 Pfam Zinc finger C2H2-type, 3 repeats 837 965 IPR040689 -
Lja3g5181 1331 ProSiteProfiles Zinc finger C2H2 type domain profile. 941 969 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5181 Lja-Chr3 94118360 94125054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5181 1042 1330 C2H2 Transcription Factor Family AT2G23740 58.983 2.14e-102 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja3g5181 zf-C2H2_3rep 4.6e-53 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5181 - - lja:Lj3g3v0075610.1 2727.97