Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5176 ATGGAACCACAAGAACAACCACATTTCAAGAAACCCAAACTGGCACTACCACCACCACCCCTTAACCACCACCACCACCATCATCATCATCATCATAGCAGCTTCAAGAAAACTCAGCTCTGCAGAAGATTCCAGCAACATGGTATGTGCGGTTTTGGGTCCAAATGCAACTTCGCACACGGCATTGCTGAACTCAACAGACTCAACAACATTCAACCACCAAACCCCCAACTTTGCAGAATGTTCTCTCGGAACAAACACTGCACCTATGGTCACTCCTGTCGTTTCCGTCATTCTTCAACCGCCAGAAATGTTGATTATCCAAACTGGGTCCGCGAGGTTTCTCGTCATCCACCACAAGAACAAGGGAAACATGATCGATACTCTTATGCAGAATACAGTGTAATGCAAACTTCTGCTGCTGCTACAAATGCCTCGACCAACACAGTGGAAGCTAGCTCTTTGCGCAAGAATGAACCATATGCTGTGAAGTTCATGTTCAAGAAAAATGACCTGCGAAAAATCAGTGGCATCTATGCTGATTGGATTTAA 552 0.4529 MEPQEQPHFKKPKLALPPPPLNHHHHHHHHHHSSFKKTQLCRRFQQHGMCGFGSKCNFAHGIAELNRLNNIQPPNPQLCRMFSRNKHCTYGHSCRFRHSSTARNVDYPNWVREVSRHPPQEQGKHDRYSYAEYSVMQTSAAATNASTNTVEASSLRKNEPYAVKFMFKKNDLRKISGIYADWI* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5176 183 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 36 61 IPR000571 GO:0046872
Lja3g5176 183 SMART c3hfinal6 73 100 IPR000571 GO:0046872
Lja3g5176 183 SMART c3hfinal6 35 62 IPR000571 GO:0046872
Lja3g5176 183 ProSiteProfiles Zinc finger C3H1-type profile. 73 101 IPR000571 GO:0046872
Lja3g5176 183 SUPERFAMILY CCCH zinc finger 35 66 IPR036855 GO:0046872
Lja3g5176 183 SUPERFAMILY CCCH zinc finger 74 101 IPR036855 GO:0046872
Lja3g5176 183 Gene3D - 28 68 - -
Lja3g5176 183 Gene3D - 76 103 - -
Lja3g5176 183 ProSiteProfiles Zinc finger C3H1-type profile. 35 63 IPR000571 GO:0046872
Lja3g5176 183 MobiDBLite consensus disorder prediction 20 34 - -
Lja3g5176 183 MobiDBLite consensus disorder prediction 1 34 - -
Lja3g5176 183 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 30 182 - -
Lja3g5176 183 PANTHER CCCH ZINC FINGER/TIS11-RELATED 30 182 IPR045877 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5176 31 99 C3H Transcription Factor Family AT1G68200 42.254 3.12e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g5176 zf-CCCH 7.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5176 - K18753 cam:101493245 141.354