Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5162 ATGAAGGACATGATTCTTGAATCCCTTTTACAATCAGCATTCAAAGAGTACTTACTTAAGGAGGTCCCACAAATCAATAAGCCTTCTAGAATAGAAGAGAAGATCAATGGGGAAATCCAAGAGAATGAAGGATATATGAACCTCGACATCACCAAGGGTTTCGGGGAGACACGTGTTAATTTGTCCAAAACAATTGCTAAATATGTGGTGAAACTAAATCAAAACAAGTCGCGTTGTTTAGGTTTTCCCGTTAATCAAGAATTTGACTATGACGCCTTGATGCCATTGTTGCATTATCACTTAAACAATGCTGGTGATCCATTTCTTGGGAGCGGCTATGGTCAAAATTCAGTAGAATTTGAAGTTTGTGTGCTTGATTGGTTCGCCAAACTATGGCAGATAGAGAAGGGTGAGTATTGGGGATACGTTACCACAGGTGGTACTGAAGGAAATTTACATGGGATTTTAATGGGGAGGGAAAAATTTCAAGATGGAATTTTATATACATCACACAACTCGCATTATTCATTATTCAAAATAGCAAGGATGTACAGAATGCAATGTGTAAAGGTCAATACGTTGGTCTCGGGTGAGATTGATTGTGCTAATTTAAAGGCTTTACTTTTATCTCACAAGGACAAACCCGCCATCATCAACCTAAACATAGGAACAACTATGAAAGGAGCAATTGATGACATTGATCTTGTGATTCAAACACTTGAGGAAAGTGGCTTCCCTCATGATCGATTCTATATTCACTGTGATGGAGCTCTATCTGGAATAATGTTGCCATTTCTGAAACAAGCTCCAAGGATTAACTTCAAGAAGCCTATCGGAAGTATATCTATTTCTGGCCACAAGTTCTTAGGATGCCCAATTCCTTGTGGTGTTGTAATAACACGTACAGAACATGTCAATGCACTAGCTAGAGATGTTGAATACATTGAATCGAGGGATGTCACAATCACAGGTAGCCGTTGTGGGCTTGCTTCAATCTTCCTCTGGTATGCACTCCAAGAAAGAGGTTTAATAGGACTTAAGAGGGAAGCACAAATGTGCATCACAAAAGCATGTCACTTACTGGACAAACTACATGACAATGATATTGGTGCAATGCGAAATGAGTTTAGTAATACCGTTGTGTTTGAAAGGCCTCCAGATGATGACTTTGTACGAAAATGGAATTTGTCTTGTGAAGGAAATGTTGCACATGTGGTTGTGATGCAGCACGTCACTATTGAAATGCTGGACTCATTTGTTAGTGAACTGGTTACAAAGCGATCCTTTTGGTTTCAAGGTGGACAAAGAAAGCCTCCTTGCATCGCAGACAATGTTGGTGGGAAAAATTGTGCTTGTACATTGCATAATTCATTTGACAAAGGGAGGGCTGCACTGAATAACACAAATGTGATCCATGCTATTATAACTGACAAAATGGATGTAATCGTCAATTGTTAA 1458 0.3916 MKDMILESLLQSAFKEYLLKEVPQINKPSRIEEKINGEIQENEGYMNLDITKGFGETRVNLSKTIAKYVVKLNQNKSRCLGFPVNQEFDYDALMPLLHYHLNNAGDPFLGSGYGQNSVEFEVCVLDWFAKLWQIEKGEYWGYVTTGGTEGNLHGILMGREKFQDGILYTSHNSHYSLFKIARMYRMQCVKVNTLVSGEIDCANLKALLLSHKDKPAIINLNIGTTMKGAIDDIDLVIQTLEESGFPHDRFYIHCDGALSGIMLPFLKQAPRINFKKPIGSISISGHKFLGCPIPCGVVITRTEHVNALARDVEYIESRDVTITGSRCGLASIFLWYALQERGLIGLKREAQMCITKACHLLDKLHDNDIGAMRNEFSNTVVFERPPDDDFVRKWNLSCEGNVAHVVVMQHVTIEMLDSFVSELVTKRSFWFQGGQRKPPCIADNVGGKNCACTLHNSFDKGRAALNNTNVIHAIITDKMDVIVNC* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5162 485 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 280 301 IPR021115 GO:0016831
Lja3g5162 485 Gene3D - 98 338 IPR015421 GO:0003824
Lja3g5162 485 PANTHER - 41 456 - -
Lja3g5162 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 117 367 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lja3g5162 485 Gene3D Aspartate Aminotransferase, domain 1 339 427 IPR015422 GO:0003824
Lja3g5162 485 SUPERFAMILY PLP-dependent transferases 75 424 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5162 Lja-Chr3 93986269 93988592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5162 167 354 Calmodulin-binding Proteins AT1G65960 25.743 3.49e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5162 K25193 - gmx:100784867 624.78