Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5154 ATGAAGAAAGATAATAGTGTCGCTTTGAAAGATGGTGAGGTTCCTGCTCGATGGACTCGTGCTCGAGCTGCTGCTTTTCGTGCATCTGGACAGTTGCCTCCTCTGAAGGGGGTACCACAAGGAATTGAAAAGCAGCCCCTAGGAGCCAACCTAAAAAGAGCGGTTTCTGATAATACATGTCTTCCGCGTAAGAAGAGGGCTGTTCTTCAGGATGTCTCTAACACTTGCTCTGAAAGTTCATACAGGAGCTGCTTCAATGCAACTAAAAATCAGGCTAAGAAAAGCAAGATTGCTAAGCCGGCTCAACTCAATGTTCCCAAAGTGGTACCATGTGTTGGTGGAGGGCTACCACGACATCAAGTTGACTCAAAAGCAGAGAGTTTGCCGCAAATGGGGCTTCGATCAGAAGATACCATGTGTTCATTTAATTTCGAAGACAATGCTTTTCTACGGCCGAGTTCCAAACAATGTGGCACAGATGATAATATGTTTGACAGCCAGACATCTGGAATATCCTCTTATCCGTTGATATCTCAAAAGAAAGCTTCTCAAACTGTTGCAGCCAAGAAAAGTAGCCTTGCTGAACTCCAGAATGTGTCACAGGATCCAGATTTCACTGATATAGATGCTGATTCTGAGGATCCTCAACTGTGCGGCCTCTATGCCACTGATATCTACAACAACTTCCGCGTTGCTGAGCTGTCAAGAAGGCCTAGCTTCATGGAAACAGTACAGCGAGATATCACTCAAAGCATGCGTGCAATACTGGTTGATTGGCTTGTAGAGGTTTCTGAAGAATACAAATTGGGAGCAGACACTCTTTACCTCACTGTATACCTCATTGATTGGTTTCTCTCCAAAAATTACATTGAAAGACCAAGACTTCAGCTGCTCGGAATTACCTGCATGCTAATTGCGTCGAAATATGAAGAAATTAATGCCCCACGTATTGAAGAATTCTGCTTCATCACGGACAACACATACACAAAAGAGGAGGTACTAAAAATGGAGACTGAAGTGTTGAAGTCCTCTGCATATCAACTGTTTGCTCCCACAACAAAAACTTTCCTCAGGAGGTTTCTTCGAGCTGCACAAGCTTCTTCCAAGAACCCTAGCTTGGAACTGGAGTACTTAGCCAATTACCTAGCTGAACTTACATTGATGAACTATGGTTTCTTAAATTTCCTTCCGTCTATGATTGCCGCATCCGCCGTGTTTCTTGCGAGATGGACATTAGATCAGTCAAGCCACCCCTGGAATCCAACTCTTCAACACTATGCCTCTTACAAACCATCAGATATGAAAACCACAGTTCTTGCATTACAGGATCTACAGCTGAATATTGATGGCTGCCCTTTAACTGCAATCCGCACAAAGTACACTCAAGAGAAGTTCAAAGGTGTAGCAGCTTTGACTTCACCAAAACTGCTTGAAACTCTGTTCTGA 1446 0.4371 MKKDNSVALKDGEVPARWTRARAAAFRASGQLPPLKGVPQGIEKQPLGANLKRAVSDNTCLPRKKRAVLQDVSNTCSESSYRSCFNATKNQAKKSKIAKPAQLNVPKVVPCVGGGLPRHQVDSKAESLPQMGLRSEDTMCSFNFEDNAFLRPSSKQCGTDDNMFDSQTSGISSYPLISQKKASQTVAAKKSSLAELQNVSQDPDFTDIDADSEDPQLCGLYATDIYNNFRVAELSRRPSFMETVQRDITQSMRAILVDWLVEVSEEYKLGADTLYLTVYLIDWFLSKNYIERPRLQLLGITCMLIASKYEEINAPRIEEFCFITDNTYTKEEVLKMETEVLKSSAYQLFAPTTKTFLRRFLRAAQASSKNPSLELEYLANYLAELTLMNYGFLNFLPSMIAASAVFLARWTLDQSSHPWNPTLQHYASYKPSDMKTTVLALQDLQLNIDGCPLTAIRTKYTQEKFKGVAALTSPKLLETLF* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5154 481 CDD CYCLIN 252 341 IPR013763 -
Lja3g5154 481 SUPERFAMILY Cyclin-like 213 343 IPR036915 -
Lja3g5154 481 Gene3D - 224 470 - -
Lja3g5154 481 SMART cyclin_7 355 443 IPR013763 -
Lja3g5154 481 SMART cyclin_7 258 342 IPR013763 -
Lja3g5154 481 PANTHER CYCLINS 45 481 IPR039361 -
Lja3g5154 481 PIRSF Cyclin_A_B_D_E 39 480 IPR039361 -
Lja3g5154 481 Pfam Cyclin, N-terminal domain 224 343 IPR006671 -
Lja3g5154 481 Pfam Cyclin, C-terminal domain 351 473 IPR004367 -
Lja3g5154 481 SMART Cyclin_C_2 351 474 IPR004367 -
Lja3g5154 481 SUPERFAMILY Cyclin-like 351 476 IPR036915 -
Lja3g5154 481 PANTHER CYCLIN-A2-4 45 481 - -
Lja3g5154 481 Gene3D - 238 349 - -
Lja3g5154 481 CDD CYCLIN 351 429 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5154 Lja-Chr3 93886517 93891792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5154 1 481 Core Cell Cycle Gene Families AT1G80370 50.813 4.07e-157 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5154 K06627 - gmx:100793657 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5154 3 93886517 93891792 Lja3g5154 3 93886517 93891792 ECH