LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g5154	ATGAAGAAAGATAATAGTGTCGCTTTGAAAGATGGTGAGGTTCCTGCTCGATGGACTCGTGCTCGAGCTGCTGCTTTTCGTGCATCTGGACAGTTGCCTCCTCTGAAGGGGGTACCACAAGGAATTGAAAAGCAGCCCCTAGGAGCCAACCTAAAAAGAGCGGTTTCTGATAATACATGTCTTCCGCGTAAGAAGAGGGCTGTTCTTCAGGATGTCTCTAACACTTGCTCTGAAAGTTCATACAGGAGCTGCTTCAATGCAACTAAAAATCAGGCTAAGAAAAGCAAGATTGCTAAGCCGGCTCAACTCAATGTTCCCAAAGTGGTACCATGTGTTGGTGGAGGGCTACCACGACATCAAGTTGACTCAAAAGCAGAGAGTTTGCCGCAAATGGGGCTTCGATCAGAAGATACCATGTGTTCATTTAATTTCGAAGACAATGCTTTTCTACGGCCGAGTTCCAAACAATGTGGCACAGATGATAATATGTTTGACAGCCAGACATCTGGAATATCCTCTTATCCGTTGATATCTCAAAAGAAAGCTTCTCAAACTGTTGCAGCCAAGAAAAGTAGCCTTGCTGAACTCCAGAATGTGTCACAGGATCCAGATTTCACTGATATAGATGCTGATTCTGAGGATCCTCAACTGTGCGGCCTCTATGCCACTGATATCTACAACAACTTCCGCGTTGCTGAGCTGTCAAGAAGGCCTAGCTTCATGGAAACAGTACAGCGAGATATCACTCAAAGCATGCGTGCAATACTGGTTGATTGGCTTGTAGAGGTTTCTGAAGAATACAAATTGGGAGCAGACACTCTTTACCTCACTGTATACCTCATTGATTGGTTTCTCTCCAAAAATTACATTGAAAGACCAAGACTTCAGCTGCTCGGAATTACCTGCATGCTAATTGCGTCGAAATATGAAGAAATTAATGCCCCACGTATTGAAGAATTCTGCTTCATCACGGACAACACATACACAAAAGAGGAGGTACTAAAAATGGAGACTGAAGTGTTGAAGTCCTCTGCATATCAACTGTTTGCTCCCACAACAAAAACTTTCCTCAGGAGGTTTCTTCGAGCTGCACAAGCTTCTTCCAAGAACCCTAGCTTGGAACTGGAGTACTTAGCCAATTACCTAGCTGAACTTACATTGATGAACTATGGTTTCTTAAATTTCCTTCCGTCTATGATTGCCGCATCCGCCGTGTTTCTTGCGAGATGGACATTAGATCAGTCAAGCCACCCCTGGAATCCAACTCTTCAACACTATGCCTCTTACAAACCATCAGATATGAAAACCACAGTTCTTGCATTACAGGATCTACAGCTGAATATTGATGGCTGCCCTTTAACTGCAATCCGCACAAAGTACACTCAAGAGAAGTTCAAAGGTGTAGCAGCTTTGACTTCACCAAAACTGCTTGAAACTCTGTTCTGA	1446	0.4371	MKKDNSVALKDGEVPARWTRARAAAFRASGQLPPLKGVPQGIEKQPLGANLKRAVSDNTCLPRKKRAVLQDVSNTCSESSYRSCFNATKNQAKKSKIAKPAQLNVPKVVPCVGGGLPRHQVDSKAESLPQMGLRSEDTMCSFNFEDNAFLRPSSKQCGTDDNMFDSQTSGISSYPLISQKKASQTVAAKKSSLAELQNVSQDPDFTDIDADSEDPQLCGLYATDIYNNFRVAELSRRPSFMETVQRDITQSMRAILVDWLVEVSEEYKLGADTLYLTVYLIDWFLSKNYIERPRLQLLGITCMLIASKYEEINAPRIEEFCFITDNTYTKEEVLKMETEVLKSSAYQLFAPTTKTFLRRFLRAAQASSKNPSLELEYLANYLAELTLMNYGFLNFLPSMIAASAVFLARWTLDQSSHPWNPTLQHYASYKPSDMKTTVLALQDLQLNIDGCPLTAIRTKYTQEKFKGVAALTSPKLLETLF*	482

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja3g5154	481	CDD	CYCLIN	252	341	IPR013763	-
Lja3g5154	481	SUPERFAMILY	Cyclin-like	213	343	IPR036915	-
Lja3g5154	481	Gene3D	-	224	470	-	-
Lja3g5154	481	SMART	cyclin_7	355	443	IPR013763	-
Lja3g5154	481	SMART	cyclin_7	258	342	IPR013763	-
Lja3g5154	481	PANTHER	CYCLINS	45	481	IPR039361	-
Lja3g5154	481	PIRSF	Cyclin_A_B_D_E	39	480	IPR039361	-
Lja3g5154	481	Pfam	Cyclin, N-terminal domain	224	343	IPR006671	-
Lja3g5154	481	Pfam	Cyclin, C-terminal domain	351	473	IPR004367	-
Lja3g5154	481	SMART	Cyclin_C_2	351	474	IPR004367	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g5154	Lja-Chr3	93886517	93891792	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g5154	1	481	Core Cell Cycle Gene Families	AT1G80370	50.813	4.07e-157	452

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g5154	K06627		-	gmx:100793657	634.795

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g5154	3	93886517	93891792	Lja3g5154	3	93886517	93891792	ECH

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